[HTML][HTML] Conventional and molecular techniques from simple breeding to speed breeding in crop plants: recent advances and future outlook

S Ahmar, RA Gill, KH Jung, A Faheem… - International journal of …, 2020 - mdpi.com
In most crop breeding programs, the rate of yield increment is insufficient to cope with the
increased food demand caused by a rapidly expanding global population. In plant breeding …

Genetic diversity is indispensable for plant breeding to improve crops

S Swarup, EJ Cargill, K Crosby, L Flagel… - Crop …, 2021 - Wiley Online Library
Plant breeders face multiple global challenges that affect food security, productivity,
accessibility, and nutritional quality. One major challenge for plant breeders is developing …

[HTML][HTML] Mutation bias reflects natural selection in Arabidopsis thaliana

JG Monroe, T Srikant, P Carbonell-Bejerano, C Becker… - Nature, 2022 - nature.com
Since the first half of the twentieth century, evolutionary theory has been dominated by the
idea that mutations occur randomly with respect to their consequences. Here we test this …

Population genomics unravels the Holocene history of bread wheat and its relatives

X Zhao, Y Guo, L Kang, C Yin, A Bi, D Xu, Z Zhang… - Nature Plants, 2023 - nature.com
Deep knowledge of crop biodiversity is essential to improving global food security. Despite
bread wheat serving as a keystone crop worldwide, the population history of bread wheat …

Short tandem repeats bind transcription factors to tune eukaryotic gene expression

CA Horton, AM Alexandari, MGB Hayes, E Marklund… - Science, 2023 - science.org
Short tandem repeats (STRs) are enriched in eukaryotic cis-regulatory elements and alter
gene expression, yet how they regulate transcription remains unknown. We found that STRs …

[HTML][HTML] 1,135 genomes reveal the global pattern of polymorphism in Arabidopsis thaliana

C Alonso-Blanco, J Andrade, C Becker, F Bemm… - Cell, 2016 - cell.com
Arabidopsis thaliana serves as a model organism for the study of fundamental physiological,
cellular, and molecular processes. It has also greatly advanced our understanding of …

[HTML][HTML] Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution

F Li, G Fan, C Lu, G Xiao, C Zou, RJ Kohel, Z Ma… - Nature …, 2015 - nature.com
Gossypium hirsutum has proven difficult to sequence owing to its complex allotetraploid
(AtDt) genome. Here we produce a draft genome using 181-fold paired-end sequences …

[HTML][HTML] Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

Y Kawahara, M de la Bastide, JP Hamilton, H Kanamori… - Rice, 2013 - Springer
Background Rice research has been enabled by access to the high quality reference
genome sequence generated in 2005 by the International Rice Genome Sequencing Project …

[HTML][HTML] The Penium margaritaceum genome: hallmarks of the origins of land plants

C Jiao, I Sørensen, X Sun, H Sun, H Behar, S Alseekh… - Cell, 2020 - cell.com
The evolutionary features and molecular innovations that enabled plants to first colonize
land are not well understood. Here, insights are provided through our report of the genome …

[HTML][HTML] Targeted knockout of a conserved plant mitochondrial gene by genome editing

J Forner, D Kleinschmidt, EH Meyer, J Gremmels… - Nature Plants, 2023 - nature.com
Fusion proteins derived from transcription activator-like effectors (TALEs) have emerged as
genome editing tools for mitochondria. TALE nucleases (TALENs) have been applied to …