History, discovery, and classification of lncRNAs

J Jarroux, A Morillon, M Pinskaya - Long non coding RNA biology, 2017 - Springer
Abstract The RNA World Hypothesis suggests that prebiotic life revolved around RNA
instead of DNA and proteins. Although modern cells have changed significantly in 4 billion …

Plant noncoding RNAs: hidden players in development and stress responses

Y Yu, Y Zhang, X Chen, Y Chen - Annual review of cell and …, 2019 - annualreviews.org
A large and significant portion of eukaryotic transcriptomes consists of noncoding RNAs
(ncRNAs) that have minimal or no protein-coding capacity but are functional. Diverse …

Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA

X Zhao, J Li, B Lian, H Gu, Y Li, Y Qi - Nature communications, 2018 - nature.com
Long non-coding RNAs (lncRNAs) have emerged as important regulators of gene
expression and plant development. Here, we identified 6,510 lncRNAs in Arabidopsis under …

Splicing regulation by long noncoding RNAs

N Romero-Barrios, MF Legascue… - Nucleic acids …, 2018 - academic.oup.com
Massive high-throughput sequencing techniques allowed the identification of thousands of
noncoding RNAs (ncRNAs) and a plethora of different mRNA processing events occurring in …

A nucleus-localized long non-coding RNA enhances drought and salt stress tolerance

T Qin, H Zhao, P Cui, N Albesher, L Xiong - Plant physiology, 2017 - academic.oup.com
Long noncoding RNAs (lncRNAs) affect gene expression through a wide range of
mechanisms and are considered as important regulators in many essential biological …

Plant immunity: from signaling to epigenetic control of defense

JS Ramirez-Prado, AA Abulfaraj, N Rayapuram… - Trends in plant …, 2018 - cell.com
Pathogen recognition by plants results in the activation of signaling pathways that induce
defense reactions. There is growing evidence indicating that epigenetic mechanisms directly …

Charting plant gene functions in the multi-omics and single-cell era

T Depuydt, B De Rybel, K Vandepoele - Trends in Plant Science, 2023 - cell.com
Despite the increased access to high-quality plant genome sequences, the set of genes with
a known function remains far from complete. With the advent of novel bulk and single-cell …

Long non-coding RNAs: emerging players regulating plant abiotic stress response and adaptation

UC Jha, H Nayyar, R Jha, M Khurshid, M Zhou… - BMC Plant …, 2020 - Springer
Background The immobile nature of plants means that they can be frequently confronted by
various biotic and abiotic stresses during their lifecycle. Among the various abiotic stresses …

Long non-coding RNAs and their biological roles in plants

X Liu, L Hao, D Li, L Zhu, S Hu - Genomics, proteomics and …, 2015 - academic.oup.com
With the development of genomics and bioinformatics, especially the extensive applications
of high-throughput sequencing technology, more transcriptional units with little or no protein …

Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation

J Bazin, K Baerenfaller, SJ Gosai… - Proceedings of the …, 2017 - National Acad Sciences
Eukaryotic transcriptomes contain a major non–protein-coding component that includes
precursors of small RNAs as well as long noncoding RNA (lncRNAs). Here, we utilized the …