SDNN-PPI: self-attention with deep neural network effect on protein-protein interaction prediction

X Li, P Han, G Wang, W Chen, S Wang, T Song - BMC genomics, 2022 - Springer
Abstract Background Protein-protein interactions (PPIs) dominate intracellular molecules to
perform a series of tasks such as transcriptional regulation, information transduction, and …

Efficient data reconstruction: The bottleneck of large-scale application of DNA storage

B Cao, Y Zheng, Q Shao, Z Liu, L Xie, Y Zhao, B Wang… - Cell Reports, 2024 - cell.com
Over the past decade, the rapid development of DNA synthesis and sequencing
technologies has enabled preliminary use of DNA molecules for digital data storage …

Adaptive coding for DNA storage with high storage density and low coverage

B Cao, X Zhang, S Cui, Q Zhang - NPJ systems biology and …, 2022 - nature.com
The rapid development of information technology has generated substantial data, which
urgently requires new storage media and storage methods. DNA, as a storage medium with …

FMG: An observable DNA storage coding method based on frequency matrix game graphs

B Cao, P Shi, Y Zheng, Q Zhang - Computers in Biology and Medicine, 2022 - Elsevier
Using complex biomolecules for storage is a new carbon-based storage method. For
example, DNA has the potential to be a good method for archival long-term data storage …

GCNSA: DNA storage encoding with a graph convolutional network and self-attention

B Cao, B Wang, Q Zhang - Iscience, 2023 - cell.com
DNA Encoding, as a key step in DNA storage, plays an important role in reading and writing
accuracy and the storage error rate. However, currently, the encoding efficiency is not high …

Design of constraint coding sets for archive DNA storage

Q Yin, Y Zheng, B Wang… - IEEE/ACM transactions on …, 2021 - ieeexplore.ieee.org
With the advent of the era of massive data, the increase of storage demand has far
exceeded current storage capacity. DNA molecules provide a reliable solution for big data …

In-vitro validated methods for encoding digital data in deoxyribonucleic acid (DNA)

GM Mortuza, J Guerrero, S Llewellyn, MD Tobiason… - BMC …, 2023 - Springer
Deoxyribonucleic acid (DNA) is emerging as an alternative archival memory technology.
Recent advancements in DNA synthesis and sequencing have both increased the capacity …

A meta-inspired termite queen algorithm for global optimization and engineering design problems

P Chen, S Zhou, Q Zhang, N Kasabov - Engineering Applications of …, 2022 - Elsevier
This paper proposes a novel bio-inspired termite queen algorithm (TQA) to solve
optimization problems by simulating the division of labor in termite populations under a …

Hidden addressing encoding for DNA storage

P Wang, Z Mu, L Sun, S Si, B Wang - Frontiers in bioengineering and …, 2022 - frontiersin.org
DNA is a natural storage medium with the advantages of high storage density and long
service life compared with traditional media. DNA storage can meet the current storage …

High net information density DNA data storage by the MOPE encoding algorithm

Y Zheng, B Cao, J Wu, B Wang… - IEEE/ACM Transactions …, 2023 - ieeexplore.ieee.org
DNA has recently been recognized as an attractive storage medium due to its high reliability,
capacity, and durability. However, encoding algorithms that simply map binary data to DNA …