Please do not recycle! Translation reinitiation in microbes and higher eukaryotes

S Gunišová, V Hronová, MP Mohammad… - FEMS microbiology …, 2018 - academic.oup.com
Protein production must be strictly controlled at its beginning and end to synthesize a
polypeptide that faithfully copies genetic information carried in the encoding mRNA. In …

The true host/s of picobirnaviruses

S Ghosh, YS Malik - Frontiers in veterinary science, 2021 - frontiersin.org
Picobirnaviruses (PBVs) are bisegmented double-stranded RNA viruses that have been
detected in a wide variety of animal species including invertebrates and in environmental …

DAMBE6: new tools for microbial genomics, phylogenetics, and molecular evolution

X Xia - Journal of Heredity, 2017 - academic.oup.com
DAMBE is a comprehensive software workbench for data analysis in molecular biology,
phylogenetics, and evolution. Several important new functions have been added since …

Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites

A Espah Borujeni, AS Channarasappa… - Nucleic acids …, 2014 - academic.oup.com
The ribosome's interactions with mRNA govern its translation rate and the effects of post-
transcriptional regulation. Long, structured 5′ untranslated regions (5′ UTRs) are …

Improved designs for pET expression plasmids increase protein production yield in Escherichia coli

PJ Shilling, K Mirzadeh, AJ Cumming… - Communications …, 2020 - nature.com
The pET series of expression plasmids are widely used for recombinant protein production
in Escherichia coli. The genetic modules controlling transcription and translation in these …

Leaderless transcripts and small proteins are common features of the mycobacterial translational landscape

SS Shell, J Wang, P Lapierre, M Mir, MR Chase… - PLoS …, 2015 - journals.plos.org
RNA-seq technologies have provided significant insight into the transcription networks of
mycobacteria. However, such studies provide no definitive information on the translational …

Retapamulin-assisted ribosome profiling reveals the alternative bacterial proteome

S Meydan, J Marks, D Klepacki, V Sharma, PV Baranov… - Molecular cell, 2019 - cell.com
The use of alternative translation initiation sites enables production of more than one protein
from a single gene, thereby expanding the cellular proteome. Although several such …

Secondary structure across the bacterial transcriptome reveals versatile roles in mRNA regulation and function

C Del Campo, A Bartholomäus, I Fedyunin… - PLoS …, 2015 - journals.plos.org
Messenger RNA acts as an informational molecule between DNA and translating
ribosomes. Emerging evidence places mRNA in central cellular processes beyond its major …

Translational initiation in E. coli occurs at the correct sites genome-wide in the absence of mRNA-rRNA base-pairing

K Saito, R Green, AR Buskirk - Elife, 2020 - elifesciences.org
Shine-Dalgarno (SD) motifs are thought to play an important role in translational initiation in
bacteria. Paradoxically, ribosome profiling studies in E. coli show no correlation between the …

Tuning response curves for synthetic biology

J Ang, E Harris, BJ Hussey, R Kil… - ACS synthetic …, 2013 - ACS Publications
Synthetic biology may be viewed as an effort to establish, formalize, and develop an
engineering discipline in the context of biological systems. The ability to tune the properties …