Prunus genetics and applications after de novo genome sequencing: achievements and prospects
MJ Aranzana, V Decroocq, E Dirlewanger… - Horticulture …, 2019 - academic.oup.com
Prior to the availability of whole-genome sequences, our understanding of the structural and
functional aspects of Prunus tree genomes was limited mostly to molecular genetic mapping …
functional aspects of Prunus tree genomes was limited mostly to molecular genetic mapping …
[HTML][HTML] An overview of duplicated gene detection methods: Why the duplication mechanism has to be accounted for in their choice
T Lallemand, M Leduc, C Landès, C Rizzon, E Lerat - Genes, 2020 - mdpi.com
Gene duplication is an important evolutionary mechanism allowing to provide new genetic
material and thus opportunities to acquire new gene functions for an organism, with major …
material and thus opportunities to acquire new gene functions for an organism, with major …
[HTML][HTML] A complete telomere-to-telomere assembly of the maize genome
J Chen, Z Wang, K Tan, W Huang, J Shi, T Li, J Hu… - Nature …, 2023 - nature.com
A complete telomere-to-telomere (T2T) finished genome has been the long pursuit of
genomic research. Through generating deep coverage ultralong Oxford Nanopore …
genomic research. Through generating deep coverage ultralong Oxford Nanopore …
OrthoVenn3: an integrated platform for exploring and visualizing orthologous data across genomes
J Sun, F Lu, Y Luo, L Bie, L Xu… - Nucleic Acids Research, 2023 - academic.oup.com
Advancements in comparative genomics research have led to a growing interest in studying
species evolution and genetic diversity. To facilitate this research, OrthoVenn3 has been …
species evolution and genetic diversity. To facilitate this research, OrthoVenn3 has been …
[HTML][HTML] Genome evolution and diversity of wild and cultivated potatoes
Potato (Solanum tuberosum L.) is the world's most important non-cereal food crop, and the
vast majority of commercially grown cultivars are highly heterozygous tetraploids. Advances …
vast majority of commercially grown cultivars are highly heterozygous tetraploids. Advances …
[PDF][PDF] The Chinese pine genome and methylome unveil key features of conifer evolution
S Niu, J Li, W Bo, W Yang, A Zuccolo, S Giacomello… - Cell, 2022 - cell.com
Conifers dominate the world's forest ecosystems and are the most widely planted tree
species. Their giant and complex genomes present great challenges for assembling a …
species. Their giant and complex genomes present great challenges for assembling a …
[PDF][PDF] Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations
P Qin, H Lu, H Du, H Wang, W Chen, Z Chen, Q He… - Cell, 2021 - cell.com
Structural variations (SVs) and gene copy number variations (gCNVs) have contributed to
crop evolution, domestication, and improvement. Here, we assembled 31 high-quality …
crop evolution, domestication, and improvement. Here, we assembled 31 high-quality …
Optical maps refine the bread wheat Triticum aestivum cv. Chinese Spring genome assembly
Until recently, achieving a reference‐quality genome sequence for bread wheat was long
thought beyond the limits of genome sequencing and assembly technology, primarily due to …
thought beyond the limits of genome sequencing and assembly technology, primarily due to …
[HTML][HTML] Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis
Tea is an important global beverage crop and is largely clonally propagated. Despite
previous studies on the species, its genetic and evolutionary history deserves further …
previous studies on the species, its genetic and evolutionary history deserves further …
Convergent selection of a WD40 protein that enhances grain yield in maize and rice
W Chen, L Chen, X Zhang, N Yang, J Guo, M Wang… - Science, 2022 - science.org
A better understanding of the extent of convergent selection among crops could greatly
improve breeding programs. We found that the quantitative trait locus KRN2 in maize and its …
improve breeding programs. We found that the quantitative trait locus KRN2 in maize and its …