The end of gating? An introduction to automated analysis of high dimensional cytometry data

F Mair, FJ Hartmann, D Mrdjen… - European journal of …, 2016 - Wiley Online Library
Ever since its invention half a century ago, flow cytometry has been a major tool for single‐
cell analysis, fueling advances in our understanding of a variety of complex cellular systems …

Recent advances in the use of microfluidic technologies for single cell analysis

TW Murphy, Q Zhang, LB Naler, S Ma, C Lu - Analyst, 2018 - pubs.rsc.org
The inherent heterogeneity in cell populations has become of great interest and importance
as analytical techniques have improved over the past decades. With the advent of …

Guidelines for the use of flow cytometry and cell sorting in immunological studies*

A Cossarizza, HD Chang, A Radbruch… - European journal of …, 2017 - Wiley Online Library
From a technical point of view a flow cytometer is a light detection device capable of
detecting photons of different wavelengths over a high dynamic range. In order to achieve a …

Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq

B Treutlein, QY Lee, JG Camp, M Mall, W Koh… - Nature, 2016 - nature.com
Direct lineage reprogramming represents a remarkable conversion of cellular and
transcriptome states,,. However, the intermediate stages through which individual cells …

Metal-isotope-tagged monoclonal antibodies for high-dimensional mass cytometry

G Han, MH Spitzer, SC Bendall, WJ Fantl, GP Nolan - Nature protocols, 2018 - nature.com
Advances in single-cell mass cytometry have increasingly improved highly multidimensional
characterization of immune cell heterogeneity. The immunoassay multiplexing capacity …

Cell-of-origin-specific 3D genome structure acquired during somatic cell reprogramming

PHL Krijger, B Di Stefano, E de Wit, F Limone… - Cell stem cell, 2016 - cell.com
Forced expression of reprogramming factors can convert somatic cells into induced
pluripotent stem cells (iPSCs). Here we studied genome topology dynamics during …

Deciphering metabolic heterogeneity by single-cell analysis

TMJ Evers, M Hochane, SJ Tans, RMA Heeren… - 2019 - ACS Publications
Single-cell analysis provides insights into cellular heterogeneity and dynamics of individual
cells. This Feature highlights recent developments in key analytical techniques suited for …

Molecular features of cellular reprogramming and development

ZD Smith, C Sindhu, A Meissner - Nature reviews Molecular cell biology, 2016 - nature.com
Differentiating somatic cells are progressively restricted to specialized functions during
ontogeny, but they can be experimentally directed to form other cell types, including those …

Molecular obstacles to clinical translation of iPSCs

N Tapia, HR Schöler - Cell stem cell, 2016 - cell.com
The ability to reprogram somatic cells into induced pluripotent stem cells (iPSCs) using
defined factors provides new tools for biomedical research. However, some iPSC clones …

Cytosplore: interactive immune cell phenotyping for large single‐cell datasets

T Höllt, N Pezzotti, V van Unen, F Koning… - Computer Graphics …, 2016 - Wiley Online Library
To understand how the immune system works, one needs to have a clear picture of its
cellular compositon and the cells' corresponding properties and functionality. Mass …