The molecular principles of gene regulation by Polycomb repressive complexes

NP Blackledge, RJ Klose - Nature reviews Molecular cell biology, 2021 - nature.com
Precise control of gene expression is fundamental to cell function and development.
Although ultimately gene expression relies on DNA-binding transcription factors to guide the …

The dynamic broad epigenetic (H3K4me3, H3K27ac) domain as a mark of essential genes

TH Beacon, GP Delcuve, C López, G Nardocci… - Clinical …, 2021 - Springer
Transcriptionally active chromatin is marked by tri-methylation of histone H3 at lysine 4
(H3K4me3) located after first exons and around transcription start sites. This epigenetic mark …

Mechanisms of oocyte maturation and related epigenetic regulation

M He, T Zhang, Y Yang, C Wang - Frontiers in cell and developmental …, 2021 - frontiersin.org
Meiosis is the basis of sexual reproduction. In female mammals, meiosis of oocytes starts
before birth and sustains at the dictyate stage of meiotic prophase I before gonadotropins …

Enhancer DNA methylation: implications for gene regulation

A Angeloni, O Bogdanovic - Essays in biochemistry, 2019 - portlandpress.com
DNA methylation involves the addition of a methyl group to the fifth carbon of the pyrimidine
cytosine ring (5-methylcytosine, 5mC). 5mC is widespread in vertebrate genomes where it is …

PRC1 drives Polycomb-mediated gene repression by controlling transcription initiation and burst frequency

P Dobrinić, AT Szczurek, RJ Klose - Nature structural & molecular …, 2021 - nature.com
The Polycomb repressive system plays a fundamental role in controlling gene expression
during mammalian development. To achieve this, Polycomb repressive complexes 1 and 2 …

ChromID identifies the protein interactome at chromatin marks

R Villaseñor, R Pfaendler, C Ambrosi, S Butz… - Nature …, 2020 - nature.com
Chromatin modifications regulate genome function by recruiting proteins to the genome.
However, the protein composition at distinct chromatin modifications has yet to be fully …

[HTML][HTML] Understanding the interplay between CpG island-associated gene promoters and H3K4 methylation

AL Hughes, JR Kelley, RJ Klose - Biochimica et Biophysica Acta (BBA) …, 2020 - Elsevier
The precise regulation of gene transcription is required to establish and maintain cell type-
specific gene expression programs during multicellular development. In addition to …

[HTML][HTML] Accurate recycling of parental histones reproduces the histone modification landscape during DNA replication

N Reverón-Gómez, C González-Aguilera… - Molecular cell, 2018 - cell.com
Chromatin organization is disrupted genome-wide during DNA replication. On newly
synthesized DNA, nucleosomes are assembled from new naive histones and old modified …

Targeting Menin disrupts the KMT2A/B and polycomb balance to paradoxically activate bivalent genes

CE Sparbier, A Gillespie, J Gomez, N Kumari… - Nature cell …, 2023 - nature.com
Precise control of activating H3K4me3 and repressive H3K27me3 histone modifications at
bivalent promoters is essential for normal development and frequently corrupted in cancer …

Sequence determinants, function, and evolution of CpG islands

A Angeloni, O Bogdanovic - Biochemical Society Transactions, 2021 - portlandpress.com
In vertebrates, cytosine-guanine (CpG) dinucleotides are predominantly methylated, with∼
80% of all CpG sites containing 5-methylcytosine (5mC), a repressive mark associated with …