[HTML][HTML] Automating the design-build-test-learn cycle towards next-generation bacterial cell factories

N Gurdo, DC Volke, D McCloskey, PI Nikel - New Biotechnology, 2023 - Elsevier
Automation is playing an increasingly significant role in synthetic biology. Groundbreaking
technologies, developed over the past 20 years, have enormously accelerated the …

Microbioreactor systems for accelerated bioprocess development

J Hemmerich, S Noack, W Wiechert… - Biotechnology …, 2018 - Wiley Online Library
In recent years, microbioreactor (MBR) systems have evolved towards versatile bioprocess
engineering tools. They provide a unique solution to combine higher experimental …

NMR-based metabolomics and fluxomics: developments and future prospects

P Giraudeau - Analyst, 2020 - pubs.rsc.org
NMR spectroscopy is an essential analytical technique in metabolomics and fluxomics
workflows, owing to its high structural elucidation capabilities combined with its intrinsic …

White biotechnology: state of the art strategies for the development of biocatalysts for biorefining

S Heux, I Meynial-Salles, MJ O'Donohue… - Biotechnology …, 2015 - Elsevier
White biotechnology is a term that is now often used to describe the implementation of
biotechnology in the industrial sphere. Biocatalysts (enzymes and microorganisms) are the …

[HTML][HTML] Metabolomics and modelling approaches for systems metabolic engineering

JK Khanijou, H Kulyk, C Bergès, LW Khoo, P Ng… - Metabolic Engineering …, 2022 - Elsevier
Metabolic engineering involves the manipulation of microbes to produce desirable
compounds through genetic engineering or synthetic biology approaches. Metabolomics …

How to measure metabolic fluxes: a taxonomic guide for 13C fluxomics

S Niedenführ, W Wiechert, K Nöh - Current opinion in biotechnology, 2015 - Elsevier
Highlights•Tracer experiments, analytics and modeling constitute the 13 C fluxomics
triumvirate.•13 C fluxomics tools differ in complexity, information power and universality.•The …

Metabolic flux analysis: a comprehensive review on sample preparation, analytical techniques, data analysis, computational modelling, and main application areas

B de Falco, F Giannino, F Carteni, S Mazzoleni… - RSC …, 2022 - pubs.rsc.org
Metabolic flux analysis (MFA) quantitatively describes cellular fluxes to understand
metabolic phenotypes and functional behaviour after environmental and/or genetic …

Recent advances in high-throughput 13C-fluxomics

S Heux, C Bergès, P Millard, JC Portais… - Current opinion in …, 2017 - Elsevier
Highlights•13 C-fluxomics provides quantification of metabolic activity in microorganisms.•
Increasing flux analysis capacity has the potential to accelerate strain design.•HT 13 C …

[HTML][HTML] Current state and challenges for dynamic metabolic modeling

E Vasilakou, D Machado, A Theorell, I Rocha… - Current opinion in …, 2016 - Elsevier
Highlights•Kinetic metabolic modeling could enable rational bioengineering and dynamic
understanding of metabolism.•We discuss experimental and computational approaches to …

Combining Metabolic Engineering and Multiplexed Screening Methods for 3-Hydroxypropionic Acid Production in Pichia pastoris

A Fina, S Heux, J Albiol, P Ferrer - Frontiers in Bioengineering and …, 2022 - frontiersin.org
Production of 3-hydroxypropionic acid (3-HP) in Pichia pastoris (syn. Komagataella phaffii)
via the malonyl-CoA pathway has been recently demonstrated using glycerol as a carbon …