Best practices in metabarcoding of fungi: from experimental design to results

L Tedersoo, M Bahram, L Zinger, RH Nilsson… - Molecular …, 2022 - Wiley Online Library
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

Current and emerging trends in techniques for plant pathogen detection

M Venbrux, S Crauwels, H Rediers - Frontiers in Plant Science, 2023 - frontiersin.org
Plant pathogenic microorganisms cause substantial yield losses in several economically
important crops, resulting in economic and social adversity. The spread of such plant …

Oralbiotica/oralbiotics: the impact of oral microbiota on dental health and demineralization: a systematic review of the literature

AD Inchingolo, G Malcangi, A Semjonova… - Children, 2022 - mdpi.com
The oral microbiota plays a vital role in the human microbiome and oral health. Imbalances
between microbes and their hosts can lead to oral and systemic disorders such as diabetes …

Metagenomics: An effective approach for exploring microbial diversity and functions

NN Nam, HDK Do, KT Loan Trinh, NY Lee - Foods, 2023 - mdpi.com
Various fields have been identified in the “omics” era, such as genomics, proteomics,
transcriptomics, metabolomics, phenomics, and metagenomics. Among these …

Facilitating the adoption of high‐throughput sequencing technologies as a plant pest diagnostic test in laboratories: A step‐by‐step description

B Lebas, I Adams, M Al Rwahnih, S Baeyen… - EPPO …, 2022 - Wiley Online Library
High‐throughput sequencing (HTS) is a powerful tool that enables the simultaneous
detection and potential identification of any organisms present in a sample. The growing …

High-throughput sequencing in plant disease management: a comprehensive review of benefits, challenges, and future perspectives

MM Nizamani, Q Zhang, G Muhae-Ud-Din… - Phytopathology …, 2023 - Springer
High-throughput sequencing (HTS) has instigated a paradigm shift in plant pathology,
showcasing its transformative role in the management of plant diseases. As a powerful tool …

Prospects of advanced metagenomics and meta-omics in the investigation of phytomicrobiome to forecast beneficial and pathogenic response

AK Wani, N Akhtar, R Singh, C Chopra… - Molecular Biology …, 2022 - Springer
Microorganisms dwell in diverse plant niches as non-axenic biotic components that are
beneficial as well pathogenic for the host. They improve nutrients-uptake, stress tolerance …

New-generation sequencing technology in diagnosis of fungal plant pathogens: a dream comes true?

M Aragona, A Haegi, MT Valente, L Riccioni, L Orzali… - Journal of Fungi, 2022 - mdpi.com
The fast and continued progress of high-throughput sequencing (HTS) and the drastic
reduction of its costs have boosted new and unpredictable developments in the field of plant …

Two decades of desiccation biology: A systematic review of the best studied angiosperm resurrection plants

SM Tebele, RA Marks, JM Farrant - Plants, 2021 - mdpi.com
Resurrection plants have an extraordinary ability to survive extreme water loss but still revive
full metabolic activity when rehydrated. These plants are useful models to understand the …

Real-time on-site diagnosis of quarantine pathogens in plant tissues by nanopore-based sequencing

L Marcolungo, A Passera, S Maestri, E Segala… - Pathogens, 2022 - mdpi.com
Rapid and sensitive assays for the identification of plant pathogens are necessary for the
effective management of crop diseases. The main limitation of current diagnostic testing is …