Analysing microbial community composition through amplicon sequencing: from sampling to hypothesis testing
LW Hugerth, AF Andersson - Frontiers in microbiology, 2017 - frontiersin.org
Microbial ecology as a scientific field is fundamentally driven by technological advance. The
past decade's revolution in DNA sequencing cost and throughput has made it possible for …
past decade's revolution in DNA sequencing cost and throughput has made it possible for …
Fungal community analysis by high‐throughput sequencing of amplified markers–a user's guide
BD Lindahl, RH Nilsson, L Tedersoo… - New …, 2013 - Wiley Online Library
Novel high‐throughput sequencing methods outperform earlier approaches in terms of
resolution and magnitude. They enable identification and relative quantification of …
resolution and magnitude. They enable identification and relative quantification of …
[图书][B] Environmental DNA: For biodiversity research and monitoring
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …
A census-based estimate of Earth's bacterial and archaeal diversity
The global diversity of Bacteria and Archaea, the most ancient and most widespread forms
of life on Earth, is a subject of intense controversy. This controversy stems largely from the …
of life on Earth, is a subject of intense controversy. This controversy stems largely from the …
Strategies for sample labelling and library preparation in DNA metabarcoding studies
Metabarcoding of DNA extracted from environmental or bulk specimen samples is
increasingly used to profile biota in basic and applied biodiversity research because of its …
increasingly used to profile biota in basic and applied biodiversity research because of its …
Forgotten fungi—the gut mycobiome in human health and disease
The human body is home to a complex and diverse microbial ecosystem that plays a central
role in host health. This includes a diversity of fungal species that is collectively referred to …
role in host health. This includes a diversity of fungal species that is collectively referred to …
Illumina metabarcoding of a soil fungal community
PA Schmidt, M Bálint, B Greshake, C Bandow… - Soil Biology and …, 2013 - Elsevier
Next generation metabarcoding is becoming an indispensable tool in fungal community
ecology. Here we tested Illumina metabarcoding, a method that generates shorter reads but …
ecology. Here we tested Illumina metabarcoding, a method that generates shorter reads but …
A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing efforts
The nuclear ribosomal internal transcribed spacer (ITS) region is the most commonly chosen
genetic marker for the molecular identification of fungi in environmental sequencing and …
genetic marker for the molecular identification of fungi in environmental sequencing and …
Accurate multiplexing and filtering for high-throughput amplicon-sequencing
Tagging amplicons with tag sequences appended to PCR primers allow the multiplexing of
numerous samples for high-throughput sequencing (HTS). This approach is routinely used …
numerous samples for high-throughput sequencing (HTS). This approach is routinely used …
Censusing marine eukaryotic diversity in the twenty-first century
M Leray, N Knowlton - … of the Royal Society B: Biological …, 2016 - royalsocietypublishing.org
The ocean constitutes one of the vastest and richest biomes on our planet. Most recent
estimations, all based on indirect approaches, suggest that there are millions of marine …
estimations, all based on indirect approaches, suggest that there are millions of marine …