The code and beyond: transcription regulation by the RNA polymerase II carboxy-terminal domain

KM Harlen, LS Churchman - Nature reviews Molecular cell biology, 2017 - nature.com
The carboxy-terminal domain (CTD) extends from the largest subunit of RNA polymerase II
(Pol II) as a long, repetitive and largely unstructured polypeptide chain. Throughout the …

Stress granules and cell signaling: more than just a passing phase?

N Kedersha, P Ivanov, P Anderson - Trends in biochemical sciences, 2013 - cell.com
Stress granules (SGs) contain translationally-stalled mRNAs, associated preinitiation factors,
and specific RNA-binding proteins. In addition, many signaling proteins are recruited to SGs …

Atomic structures of low-complexity protein segments reveal kinked β sheets that assemble networks

MP Hughes, MR Sawaya, DR Boyer, L Goldschmidt… - Science, 2018 - science.org
Subcellular membraneless assemblies are a reinvigorated area of study in biology, with
spirited scientific discussions on the forces between the low-complexity protein domains …

Intrinsically disordered proteins: modes of binding with emphasis on disordered domains

OM Morris, JH Torpey, RL Isaacson - Open biology, 2021 - royalsocietypublishing.org
Our notions of protein function have long been determined by the protein structure–function
paradigm. However, the idea that protein function is dictated by a prerequisite …

Looking beyond the core: the role of flanking regions in the aggregation of amyloidogenic peptides and proteins

SM Ulamec, DJ Brockwell, SE Radford - Frontiers in Neuroscience, 2020 - frontiersin.org
Amyloid proteins are involved in many neurodegenerative disorders such as Alzheimer's
disease [Tau, Amyloid β (Aβ)], Parkinson's disease [alpha-synuclein (αSyn)], and …

Promiscuity as a functional trait: intrinsically disordered regions as central players of interactomes

A Cumberworth, G Lamour, MM Babu… - Biochemical …, 2013 - portlandpress.com
Because of their pervasiveness in eukaryotic genomes and their unique properties,
understanding the role that ID (intrinsically disordered) regions in proteins play in the …

The ocean sampling day consortium

A Kopf, M Bicak, R Kottmann, J Schnetzer, I Kostadinov… - Gigascience, 2015 - Springer
Abstract Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …

Single-molecule imaging reveals dynamic biphasic partition of RNA-binding proteins in stress granules

B Niewidok, M Igaev, A Pereira da Graca… - Journal of Cell …, 2018 - rupress.org
Stress granules (SGs) are cytosolic, nonmembranous RNA–protein complexes. In vitro
experiments suggested that they are formed by liquid–liquid phase separation; however …

Properties of protein drug target classes

SC Bull, AJ Doig - PloS one, 2015 - journals.plos.org
Accurate identification of drug targets is a crucial part of any drug development program. We
mined the human proteome to discover properties of proteins that may be important in …

[HTML][HTML] Role of TET1-mediated epigenetic modulation in Alzheimer's disease

MJ Armstrong, Y Jin, SM Vattathil, Y Huang… - Neurobiology of …, 2023 - Elsevier
Alzheimer's disease (AD) is a neurodegenerative disorder influenced by a complex interplay
of environmental, epigenetic, and genetic factors. DNA methylation (5mC) and …