The road to fully programmable protein catalysis
The ability to design efficient enzymes from scratch would have a profound effect on
chemistry, biotechnology and medicine. Rapid progress in protein engineering over the past …
chemistry, biotechnology and medicine. Rapid progress in protein engineering over the past …
Photobiocatalytic strategies for organic synthesis
MA Emmanuel, SG Bender, C Bilodeau… - Chemical …, 2023 - ACS Publications
Biocatalysis has revolutionized chemical synthesis, providing sustainable methods for
preparing various organic molecules. In enzyme-mediated organic synthesis, most reactions …
preparing various organic molecules. In enzyme-mediated organic synthesis, most reactions …
Scaffolding protein functional sites using deep learning
The binding and catalytic functions of proteins are generally mediated by a small number of
functional residues held in place by the overall protein structure. Here, we describe deep …
functional residues held in place by the overall protein structure. Here, we describe deep …
Mechanical properties and peculiarities of molecular crystals
In the last century, molecular crystals functioned predominantly as a means for determining
the molecular structures via X-ray diffraction, albeit as the century came to a close the …
the molecular structures via X-ray diffraction, albeit as the century came to a close the …
Diffusion probabilistic modeling of protein backbones in 3d for the motif-scaffolding problem
Construction of a scaffold structure that supports a desired motif, conferring protein function,
shows promise for the design of vaccines and enzymes. But a general solution to this motif …
shows promise for the design of vaccines and enzymes. But a general solution to this motif …
Directed evolution: methodologies and applications
Directed evolution aims to expedite the natural evolution process of biological molecules
and systems in a test tube through iterative rounds of gene diversifications and library …
and systems in a test tube through iterative rounds of gene diversifications and library …
A designed photoenzyme for enantioselective [2+ 2] cycloadditions
JS Trimble, R Crawshaw, FJ Hardy, CW Levy… - Nature, 2022 - nature.com
The ability to program new modes of catalysis into proteins would allow the development of
enzyme families with functions beyond those found in nature. To this end, genetic code …
enzyme families with functions beyond those found in nature. To this end, genetic code …
From nature to industry: Harnessing enzymes for biocatalysis
Biocatalysis harnesses enzymes to make valuable products. This green technology is used
in countless applications from bench scale to industrial production and allows practitioners …
in countless applications from bench scale to industrial production and allows practitioners …
Combining chemistry and protein engineering for new-to-nature biocatalysis
Biocatalysis, the application of enzymes to solve synthetic problems of human import, has
blossomed into a powerful technology for chemical innovation. In the past decade, a …
blossomed into a powerful technology for chemical innovation. In the past decade, a …
Generative models for graph-based protein design
Engineered proteins offer the potential to solve many problems in biomedicine, energy, and
materials science, but creating designs that succeed is difficult in practice. A significant …
materials science, but creating designs that succeed is difficult in practice. A significant …