From a melt of rings to chromosome territories: the role of topological constraints in genome folding

JD Halverson, J Smrek, K Kremer… - Reports on Progress in …, 2014 - iopscience.iop.org
We review pro and contra of the hypothesis that generic polymer properties of topological
constraints are behind many aspects of chromatin folding in eukaryotic cells. For that …

[图书][B] Engineering applications of noncommutative harmonic analysis: with emphasis on rotation and motion groups

GS Chirikjian, AB Kyatkin - 2000 - taylorfrancis.com
The classical Fourier transform is one of the most widely used mathematical tools in
engineering. However, few engineers know that extensions of harmonic analysis to …

Anomalous diffusion in fractal globules

MV Tamm, LI Nazarov, AA Gavrilov, AV Chertovich - Physical review letters, 2015 - APS
The fractal globule state is a popular model for describing chromatin packing in eukaryotic
nuclei. Here we provide a scaling theory and dissipative particle dynamics computer …

Effects of topological constraints on globular polymers

MV Imakaev, KM Tchourine, SK Nechaev, LA Mirny - Soft matter, 2015 - pubs.rsc.org
Topological constraints can affect both equilibrium and dynamic properties of polymer
systems and can play a role in the organization of chromosomes. Despite many theoretical …

Disordered polymers

AY Grosberg - Physics-Uspekhi, 1997 - iopscience.iop.org
A single polymer macromolecule is considered with disorder types such as branches, knots,
and heterogeneous sequences of chemical units. In all cases, simple theoretical …

Modelling and visualization of landscape complexity with braid topology

F Papadimitriou - Modern approaches to the visualization of landscapes, 2020 - Springer
A new method is presented here for temporal modelling and visualization of the spatial
complexity changes of landscape boundaries. The method is based on topological braid …

Models of random knots

C Even-Zohar - Journal of Applied and Computational Topology, 2017 - Springer
The study of knots and links from a probabilistic viewpoint provides insight into the behavior
of “typical” knots, and opens avenues for new constructions of knots and other topological …

Statistical Properties of Locally Free Groups¶ with Applications to Braid Groups¶ and Growth of Random Heaps

AM Vershik, S Nechaev, R Bikbov - Communications in Mathematical …, 2000 - Springer
The main statistical characteristics of locally free groups: the growth, the drift and the entropy
are considered and relations between them are established. Our results assert that:(i) the …

Isoperimetry for wreath products of Markov chains and multiplicity of selfintersections of random walks

A Erschler - Probability Theory and related fields, 2006 - Springer
We prove an isoperimetric inequality for wreath products of Markov chains with variable
fibers. We use isoperimetric inequalities for wreath products to estimate the return probability …

Asymptotic laws for random knot diagrams

H Chapman - Journal of Physics A: Mathematical and Theoretical, 2017 - iopscience.iop.org
We study random knotting by considering knot and link diagrams as decorated,(rooted)
topological maps on spheres and pulling them uniformly from among sets of a given number …