Molecular graphics: bridging structural biologists and computer scientists
Visualization of molecular structures is one of the most common tasks carried out by
structural biologists, typically using software, such as Chimera, COOT, PyMOL, or VMD. In …
structural biologists, typically using software, such as Chimera, COOT, PyMOL, or VMD. In …
Multiscale visualization: A structured literature analysis
Multiscale visualizations are typically used to analyze multiscale processes and data in
various application domains, such as the visual exploration of hierarchical genome …
various application domains, such as the visual exploration of hierarchical genome …
Predicting drug–target interactions with deep-embedding learning of graphs and sequences
Computational approaches for predicting drug–target interactions (DTIs) play an important
role in drug discovery since conventional screening experiments are time-consuming and …
role in drug discovery since conventional screening experiments are time-consuming and …
Vivern–a virtual environment for multiscale visualization and modeling of DNA nanostructures
DNA nanostructures offer promising applications, particularly in the biomedical domain, as
they can be used for targeted drug delivery, construction of nanorobots, or as a basis for …
they can be used for targeted drug delivery, construction of nanorobots, or as a basis for …
The Simularium Viewer: an interactive online tool for sharing spatiotemporal biological models
B Lyons, E Isaac, NH Choi, TP Do, J Domingus… - Nature …, 2022 - nature.com
To the Editor—We present the Simularium Viewer, a user-friendly, open-source application
that makes it easy to share and interrogate interactive three-dimensional (3D) visualizations …
that makes it easy to share and interrogate interactive three-dimensional (3D) visualizations …
Analysis of long molecular dynamics simulations using interactive focus+ context visualization
Analyzing molecular dynamics (MD) simulations is a key aspect to understand protein
dynamics and function. With increasing computational power, it is now possible to generate …
dynamics and function. With increasing computational power, it is now possible to generate …
Creative molecular model design for chemistry edutainment
W Li - Proceedings of the 14th International Conference on …, 2022 - dl.acm.org
Since 3D molecular structure visualization is important for chemistry education, lots of
successful works have been focused on molecular visualization. However, most of the …
successful works have been focused on molecular visualization. However, most of the …
LifeBrush: Painting, simulating, and visualizing dense biomolecular environments
LifeBrush is a Cyberworld for painting dynamic molecular illustrations in virtual reality (VR)
that then come to life as interactive simulations. We designed our system for the biological …
that then come to life as interactive simulations. We designed our system for the biological …
Scale Trotter: Illustrative visual travels across negative scales
We present ScaleTrotter, a conceptual framework for an interactive, multi-scale visualization
of biological mesoscale data and, specifically, genome data. ScaleTrotter allows viewers to …
of biological mesoscale data and, specifically, genome data. ScaleTrotter allows viewers to …
Nanoscape, a data-driven 3D real-time interactive virtual cell environment
SR Kadir, A Lilja, N Gunn, C Strong, RT Hughes… - Elife, 2021 - elifesciences.org
Our understanding of cellular and structural biology has reached unprecedented levels of
detail, and computer visualisation techniques can be used to create three-dimensional (3D) …
detail, and computer visualisation techniques can be used to create three-dimensional (3D) …