3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study

J Dolz, C Desrosiers, IB Ayed - NeuroImage, 2018 - Elsevier
This study investigates a 3D and fully convolutional neural network (CNN) for subcortical
brain structure segmentation in MRI. 3D CNN architectures have been generally avoided …

Mindboggling morphometry of human brains

A Klein, SS Ghosh, FS Bao, J Giard… - PLoS computational …, 2017 - journals.plos.org
Mindboggle (http://mindboggle. info) is an open source brain morphometry platform that
takes in preprocessed T1-weighted MRI data and outputs volume, surface, and tabular data …

MR Imaging of Human Brain Mechanics In Vivo: New Measurements to Facilitate the Development of Computational Models of Brain Injury

PV Bayly, A Alshareef, AK Knutsen, K Upadhyay… - Annals of biomedical …, 2021 - Springer
Computational models of the brain and its biomechanical response to skull accelerations
are important tools for understanding and predicting traumatic brain injuries (TBIs) …

DeepHarmony: A deep learning approach to contrast harmonization across scanner changes

BE Dewey, C Zhao, JC Reinhold, A Carass… - Magnetic resonance …, 2019 - Elsevier
Magnetic resonance imaging (MRI) is a flexible medical imaging modality that often lacks
reproducibility between protocols and scanners. It has been shown that even when care is …

Evaluating white matter lesion segmentations with refined Sørensen-Dice analysis

A Carass, S Roy, A Gherman, JC Reinhold, A Jesson… - Scientific reports, 2020 - nature.com
The Sørensen-Dice index (SDI) is a widely used measure for evaluating medical image
segmentation algorithms. It offers a standardized measure of segmentation accuracy which …

Smart pathological brain detection by synthetic minority oversampling technique, extreme learning machine, and Jaya algorithm

YD Zhang, G Zhao, J Sun, X Wu, ZH Wang… - Multimedia Tools and …, 2018 - Springer
Pathological brain detection is an automated computer-aided diagnosis for brain images.
This study provides a novel method to achieve this goal. We first used synthetic minority …

Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images

A Carass, JL Cuzzocreo, S Han… - Neuroimage, 2018 - Elsevier
The human cerebellum plays an essential role in motor control, is involved in cognitive
function (ie, attention, working memory, and language), and helps to regulate emotional …

Brain and retinal atrophy in African-Americans versus Caucasian-Americans with multiple sclerosis: a longitudinal study

NG Caldito, S Saidha, ES Sotirchos, BE Dewey… - Brain, 2018 - academic.oup.com
Abstract On average, African Americans with multiple sclerosis demonstrate higher
inflammatory disease activity, faster disability accumulation, greater visual dysfunction, more …

Presurgical temporal lobe epilepsy connectome fingerprint for seizure outcome prediction

VL Morgan, LE Sainburg, GW Johnson… - Brain …, 2022 - academic.oup.com
Temporal lobe epilepsy presents a unique situation where confident clinical localization of
the seizure focus does not always result in a seizure-free or favourable outcome after mesial …

Automatic segmentation of the thalamus using a massively trained 3D convolutional neural network: higher sensitivity for the detection of reduced thalamus volume by …

R Opfer, J Krüger, L Spies, AC Ostwaldt, HH Kitzler… - European …, 2023 - Springer
Objectives To develop an automatic method for accurate and robust thalamus segmentation
in T1w-MRI for widespread clinical use without the need for strict harmonization of …