Epigenetics as a mediator of plasticity in cancer

AP Feinberg, A Levchenko - Science, 2023 - science.org
The concept of an epigenetic landscape describing potential cellular fates arising from
pluripotent cells, first advanced by Conrad Waddington, has evolved in light of experiments …

Nonequilibrium physics in biology

X Fang, K Kruse, T Lu, J Wang - Reviews of Modern Physics, 2019 - APS
Life is characterized by a myriad of complex dynamic processes allowing organisms to grow,
reproduce, and evolve. Physical approaches for describing systems out of thermodynamic …

Ecological resilience: what to measure and how

V Dakos, S Kéfi - Environmental Research Letters, 2022 - iopscience.iop.org
The question of what and how to measure ecological resilience has been troubling
ecologists since Holling 1973s seminal paper in which he defined resilience as the ability of …

The human cell atlas

A Regev, SA Teichmann, ES Lander, I Amit, C Benoist… - elife, 2017 - elifesciences.org
The recent advent of methods for high-throughput single-cell molecular profiling has
catalyzed a growing sense in the scientific community that the time is ripe to complete the …

[HTML][HTML] Network resilience

X Liu, D Li, M Ma, BK Szymanski, HE Stanley, J Gao - Physics Reports, 2022 - Elsevier
Many systems on our planet shift abruptly and irreversibly from the desired state to an
undesired state when forced across a “tipping point”. Some examples are mass extinctions …

Cell fate decision as high-dimensional critical state transition

M Mojtahedi, A Skupin, J Zhou, IG Castaño… - PLoS …, 2016 - journals.plos.org
Cell fate choice and commitment of multipotent progenitor cells to a differentiated lineage
requires broad changes of their gene expression profile. But how progenitor cells overcome …

Non-genetic cancer cell plasticity and therapy-induced stemness in tumour relapse:'What does not kill me strengthens me'

AO Pisco, S Huang - British journal of cancer, 2015 - nature.com
Therapy resistance and tumour relapse after drug therapy are commonly explained by
Darwinian selection of pre-existing drug-resistant, often stem-like cancer cells resulting from …

Non-Darwinian dynamics in therapy-induced cancer drug resistance

AO Pisco, A Brock, J Zhou, A Moor, M Mojtahedi… - Nature …, 2013 - nature.com
The development of drug resistance, the prime cause of failure in cancer therapy, is
commonly explained by the selection of resistant mutant cancer cells. However, dynamic …

Landscape and flux theory of non-equilibrium dynamical systems with application to biology

J Wang - Advances in Physics, 2015 - Taylor & Francis
We present a review of the recently developed landscape and flux theory for non-equilibrium
dynamical systems. We point out that the global natures of the associated dynamics for non …

Dynamical landscapes of cell fate decisions

M Sáez, J Briscoe, DA Rand - Interface focus, 2022 - royalsocietypublishing.org
The generation of cellular diversity during development involves differentiating cells
transitioning between discrete cell states. In the 1940s, the developmental biologist Conrad …