A synthetic circuit for buffering gene dosage variation between individual mammalian cells

J Yang, J Lee, MA Land, S Lai, OA Igoshin… - Nature …, 2021 - nature.com
Precise control of gene expression is critical for biological research and biotechnology.
However, transient plasmid transfections in mammalian cells produce a wide distribution of …

Combined effects of dosage compensation and incomplete dominance on gene expression in triploid cyprinids

L Ren, X Yan, L Cao, J Li, X Zhang, X Gao, J Liu… - DNA …, 2019 - academic.oup.com
Hybridization and polyploidy are pervasive evolutionary features of flowering plants and
frequent among some animal groups, such as fish. These processes always lead to novel …

miR-124-2, miR-92-A1 and miR-372 regulate differential gene expression in a mathematical model of the progression of ductal carcinoma in situ (DCIS) to …

CM Ricardo, CC Noé… - 2022 IEEE 4th International …, 2022 - ieeexplore.ieee.org
Breast cancer is a widely studied genetic disease that has a clear division between an initial
stage, starting with the atypical ductal hyperplasia progressing to ductal carcinoma in situ …

A Systems Biology Approach to Investigate Control Targets of Intracellular Calcium Transients Induced by Clostridium Perfringens Phospholipase C

L Brenes-Guillén, MS Acón-Chan… - … Work Conference on …, 2018 - ieeexplore.ieee.org
Clostridium perfringens phospholipase C (CpPLC) plays a key role in the pathogenesis of
gas gangrene, an acute and life-threatening infection in humans. CpPLC leads to the …

Analysis of Large Scale Gene Expression Data sets from TCGA Identifies Potential Candidate Genes under Dosage Compensation in Breast Cancer

GO Blanco, MS Acon-Chan… - Proceedings of the …, 2018 - search.proquest.com
In a previous effort, we developed a model to study the hypothesis of gene dosage
compensation in the limited data set of NCI60 cancer cell lines. Currently, we have …

Modeling Gene Dosage Compensation Mediated by Sensor Loops in Large-Scale Mathematical Models of Microrna-Transcription Factor Networks

MS Acón-Chan, F Siles-Canales… - … Work Conference on …, 2018 - ieeexplore.ieee.org
In a previous work we developed a biocomputational platform to automatically construct
mathematical models of microRNA-transcription factor (TF) regulatory network to study gene …

Modules of correlated genes in a gene expression regulatory network of CDDP-resistant cancer cells

D Jiménez-Vargas, MS Acón, Ö Sahin… - … Work Conference on …, 2018 - ieeexplore.ieee.org
Chemotherapeutic drugs have been used as important strategies in cancer treatment.
However, chemotherapy-resistant tumors arise especially in relapsing and progressive …

In-Silico Modeling for the Identification of Regulatory Microrna Targets in Epithelial Mesenchymal Transition

MA Bogantes-Vidal… - … Work Conference on …, 2018 - ieeexplore.ieee.org
Epithelial Mesenchymal Transition (EMT) is a common process in many cases of cancer that
leads to metastasis. Current understanding of this process has determined that the capability …

A Transcriptional Regulatory Network Model Reveals miR-34a as a Potential Regulator of Proliferation in Cancer Cell Lines

C Vargas-Mora, MS Acón… - … Work Conference on …, 2018 - ieeexplore.ieee.org
The genetic instability caused by the disruption of the mechanism of the DNA-damage
response (DDR) has been linked to cancer development. One of the most important and …

A Systems Biology Approach to Identify Candidate Targets to Downregulate Angiogenic Gene Expression in Cancer

CG Paola, MS Aeón-Chan… - … Work Conference on …, 2018 - ieeexplore.ieee.org
The control of angiogenesis in cancer has been recognized as a promising therapeutic
target for many diseases like cancer. Specifically, the Angiopoietin-2-Vascular Endothelial …