CVTree3 web server for whole-genome-based and alignment-free prokaryotic phylogeny and taxonomy
G Zuo, B Hao - Genomics, Proteomics and Bioinformatics, 2015 - academic.oup.com
A faithful phylogeny and an objective taxonomy for prokaryotes should agree with each
other and ultimately follow the genome data. With the number of sequenced genomes …
other and ultimately follow the genome data. With the number of sequenced genomes …
Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species
I Kjærbølling, TC Vesth, JC Frisvad… - Proceedings of the …, 2018 - National Acad Sciences
The fungal genus of Aspergillus is highly interesting, containing everything from industrial
cell factories, model organisms, and human pathogens. In particular, this group has a prolific …
cell factories, model organisms, and human pathogens. In particular, this group has a prolific …
CVTree: a parallel alignment-free phylogeny and taxonomy tool based on composition vectors of genomes
G Zuo - Genomics, Proteomics and Bioinformatics, 2021 - academic.oup.com
Abstract Composition Vector Tree (CVTree) is an alignment-free algorithm to infer
phylogenetic relationships from genome sequences. It has been successfully applied to …
phylogenetic relationships from genome sequences. It has been successfully applied to …
Novel cultivated endophytic Verrucomicrobia reveal deep-rooting traits of bacteria to associate with plants
W Bünger, X Jiang, J Müller, T Hurek… - Scientific Reports, 2020 - nature.com
Despite the relevance of complex root microbial communities for plant health, growth and
productivity, the molecular basis of these plant-microbe interactions is not well understood …
productivity, the molecular basis of these plant-microbe interactions is not well understood …
Development of an Online Genome Sequence Comparison Resource for Bacillus cereus sensu lato Strains Using the Efficient Composition Vector Method
An automated method was developed for differentiating closely related B. cereus sensu lato
(sl) species, especially biopesticide Bacillus thuringiensis, from other human pathogens, B …
(sl) species, especially biopesticide Bacillus thuringiensis, from other human pathogens, B …
Multiple approaches to phylogenomic reconstruction of the fungal kingdom
CGP McCarthy, DA Fitzpatrick - Advances in genetics, 2017 - Elsevier
Fungi are possibly the most diverse eukaryotic kingdom, with over a million member species
and an evolutionary history dating back a billion years. Fungi have been at the forefront of …
and an evolutionary history dating back a billion years. Fungi have been at the forefront of …
Quercetin mitigates rheumatoid arthritis by inhibiting adenosine deaminase in rats
Rheumatoid arthritis (RA) is a chronic inflammatory joint disease characterized by synovial
proliferation and bone destruction. Adenosine deaminase (ADA) is a key inflammatory …
proliferation and bone destruction. Adenosine deaminase (ADA) is a key inflammatory …
Phylogeny and Taxonomy of Archaea: A Comparison of the Whole-Genome-Based CVTree Approach with 16S rRNA Sequence Analysis
A tripartite comparison of Archaea phylogeny and taxonomy at and above the rank order is
reported:(1) the whole-genome-based and alignment-free CVTree using 179 genomes;(2) …
reported:(1) the whole-genome-based and alignment-free CVTree using 179 genomes;(2) …
Visnagin alleviates rheumatoid arthritis via its potential inhibitory impact on malate dehydrogenase enzyme: in silico, in vitro, and in vivo studies
Rheumatoid arthritis (RA) is a chronic inflammatory autoimmune disorder. The present study
aimed to evaluate the in silico, in vitro, and in vivo inhibitory effect of visnagin on malate …
aimed to evaluate the in silico, in vitro, and in vivo inhibitory effect of visnagin on malate …
Alignment-free approaches for predicting novel Nuclear Mitochondrial Segments (NUMTs) in the human genome
W Li, J Freudenberg, J Freudenberg - Gene, 2019 - Elsevier
The nuclear human genome harbors sequences of mitochondrial origin, indicating an
ancestral transfer of DNA from the mitogenome. Several Nuclear Mitochondrial Segments …
ancestral transfer of DNA from the mitogenome. Several Nuclear Mitochondrial Segments …