Using AlphaFold predictions in viral research
D Gutnik, P Evseev, K Miroshnikov… - Current Issues in …, 2023 - mdpi.com
Elucidation of the tertiary structure of proteins is an important task for biological and medical
studies. AlphaFold, a modern deep-learning algorithm, enables the prediction of protein …
studies. AlphaFold, a modern deep-learning algorithm, enables the prediction of protein …
Computational methods for unlocking the secrets of potassium channels: Structure, mechanism, and drug design
L Wang, Q Zhang, HHY Tong, X Yao… - Wiley Interdisciplinary …, 2024 - Wiley Online Library
Potassium (K+) channels play vital roles in various physiological functions, including
regulating K+ flow in cell membranes, impacting nervous system signal transduction …
regulating K+ flow in cell membranes, impacting nervous system signal transduction …
Integrating dynamic network analysis with AI for enhanced epitope prediction in PD-L1: affibody interactions
Understanding binding epitopes involved in protein–protein interactions and accurately
determining their structure are long-standing goals with broad applicability in industry and …
determining their structure are long-standing goals with broad applicability in industry and …
Molecular origins of force-dependent protein complex stabilization during bacterial infections
The unbinding pathway of a protein complex can vary significantly depending on
biochemical and mechanical factors. Under mechanical stress, a complex may dissociate …
biochemical and mechanical factors. Under mechanical stress, a complex may dissociate …
[HTML][HTML] The plastidial protein acetyltransferase GNAT1 forms a complex with GNAT2, yet their interaction is dispensable for state transitions
A Brünje, M Füßl, J Eirich, JB Boyer, P Heinkow… - Molecular & Cellular …, 2024 - Elsevier
Protein N-acetylation is one of the most abundant co-and post-translational modifications in
eukaryotes, extending its occurrence to chloroplasts within vascular plants. Recently, a …
eukaryotes, extending its occurrence to chloroplasts within vascular plants. Recently, a …
Best Practices of Using AI-Based Models in Crystallography and Their Impact in Structural Biology
The recent breakthrough made in the field of three-dimensional (3D) structure prediction by
artificial intelligence softwares, such as initially AlphaFold2 (AF2) and RosettaFold (RF) and …
artificial intelligence softwares, such as initially AlphaFold2 (AF2) and RosettaFold (RF) and …
A multiple-step screening protocol to identify norepinephrine and dopamine reuptake inhibitors for depression
P Wang, F Yan, J Dong, S Wang, Y Shi… - Physical Chemistry …, 2023 - pubs.rsc.org
Depression severely impairs the health of people all over the world. Cognitive dysfunction
due to depression has resulted in a severe economic burden to family and society induced …
due to depression has resulted in a severe economic burden to family and society induced …
May the force be with you: The role of hyper-mechanostability of the bone sialoprotein binding protein during early stages of Staphylococci infections
PSFC Gomes, M Forrester, M Pace, DEB Gomes… - Frontiers in …, 2023 - frontiersin.org
The bone sialoprotein-binding protein (Bbp) is a mechanoactive MSCRAMM protein
expressed on the surface of Staphylococcus aureus that mediates adherence of the …
expressed on the surface of Staphylococcus aureus that mediates adherence of the …
Fostering discoveries in the era of exascale computing: How the next generation of supercomputers empowers computational and experimental biophysics alike
MCR Melo, RC Bernardi - Biophysical Journal, 2023 - cell.com
Over a century ago, physicists started broadly relying on theoretical models to guide new
experiments. Soon thereafter, chemists began doing the same. Now, biological research …
experiments. Soon thereafter, chemists began doing the same. Now, biological research …
Identification of a putative novel polycyclic aromatic hydrocarbon-biodegrading gene cluster in a marine Roseobacteraceae bacterium Sagittula sp. MA-2
M Abe, M Sakai, RA Kanaly, JF Mori - Microbiology Spectrum, 2024 - journals.asm.org
The ability to biodegrade polycyclic aromatic hydrocarbons (PAHs) and the catabolic
enzymes responsible for PAH biotransformation in marine bacteria belonging to the family …
enzymes responsible for PAH biotransformation in marine bacteria belonging to the family …