Demography and its effects on genomic variation in crop domestication

BS Gaut, DK Seymour, Q Liu, Y Zhou - Nature plants, 2018 - nature.com
Over two thousand plant species have been modified morphologically through cultivation
and human use. Here, we review three aspects of crop domestication that are currently …

From forest to field: perennial fruit crop domestication

AJ Miller, BL Gross - American journal of botany, 2011 - Wiley Online Library
• Premise of the study: Archaeological and genetic analyses of seed‐propagated annual
crops have greatly advanced our understanding of plant domestication and evolution …

GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice

J Liu, J Chen, X Zheng, F Wu, Q Lin, Y Heng, P Tian… - Nature plants, 2017 - nature.com
Grain size is a major determinant of grain yield in cereal crops. qSW5/GW5, which exerts the
greatest effect on rice grain width and weight, was fine-mapped to a 2,263-bp/21-kb …

COLD1 confers chilling tolerance in rice

Y Ma, X Dai, Y Xu, W Luo, X Zheng, D Zeng, Y Pan… - Cell, 2015 - cell.com
Rice is sensitive to cold and can be grown only in certain climate zones. Human selection of
japonica rice has extended its growth zone to regions with lower temperature, while the …

Natural variation in the promoter of GSE5 contributes to grain size diversity in rice

P Duan, J Xu, D Zeng, B Zhang, M Geng, G Zhang… - Molecular plant, 2017 - cell.com
The utilization of natural genetic variation greatly contributes to improvement of important
agronomic traits in crops. Understanding the genetic basis for natural variation of grain size …

Genome-wide association studies of 14 agronomic traits in rice landraces

X Huang, X Wei, T Sang, Q Zhao, QI Feng, Y Zhao… - Nature …, 2010 - nature.com
Uncovering the genetic basis of agronomic traits in crop landraces that have adapted to
various agro-climatic conditions is important to world food security. Here we have …

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

X Xu, X Liu, S Ge, JD Jensen, F Hu, X Li, Y Dong… - Nature …, 2012 - nature.com
Rice is a staple crop that has undergone substantial phenotypic and physiological changes
during domestication. Here we resequenced the genomes of 40 cultivated accessions …

Wxlv, the ancestral allele of rice Waxy gene

C Zhang, J Zhu, S Chen, X Fan, Q Li, Y Lu, M Wang… - Molecular plant, 2019 - cell.com
In rice grains, the Waxy (Wx) gene is responsible for the synthesis of amylose, the most
important determinant for eating and cooking quality. The effects of several Wx alleles on …

Evolutionary genomics of grape (Vitis vinifera ssp. vinifera) domestication

Y Zhou, M Massonnet, JS Sanjak… - Proceedings of the …, 2017 - National Acad Sciences
We gathered genomic data from grapes (Vitis vinifera ssp. vinifera), a clonally propagated
perennial crop, to address three ongoing mysteries about plant domestication. The first is the …

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

HM Lam, X Xu, X Liu, W Chen, G Yang, FL Wong… - Nature …, 2010 - nature.com
We report a large-scale analysis of the patterns of genome-wide genetic variation in
soybeans. We re-sequenced a total of 17 wild and 14 cultivated soybean genomes to an …