[PDF][PDF] Implications of AlphaFold2 for crystallographic phasing by molecular replacement
The AlphaFold2 results in the 14th edition of Critical Assessment of Structure Prediction
(CASP14) showed that accurate (low root-mean-square deviation) in silico models of protein …
(CASP14) showed that accurate (low root-mean-square deviation) in silico models of protein …
[PDF][PDF] The CCP4 suite: integrative software for macromolecular crystallography
The Collaborative Computational Project No. 4 (CCP4) is a UK-led international collective
with a mission to develop, test, distribute and promote software for macromolecular …
with a mission to develop, test, distribute and promote software for macromolecular …
Electron diffraction of 3D molecular crystals
Electron crystallography has a storied history which rivals that of its more established X-ray-
enabled counterpart. Recent advances in data collection and analysis have sparked a …
enabled counterpart. Recent advances in data collection and analysis have sparked a …
The cytotoxic Staphylococcus aureus PSMα3 reveals a cross-α amyloid-like fibril
E Tayeb-Fligelman, O Tabachnikov, A Moshe… - Science, 2017 - science.org
Amyloids are ordered protein aggregates, found in all kingdoms of life, and are involved in
aggregation diseases as well as in physiological activities. In microbes, functional amyloids …
aggregation diseases as well as in physiological activities. In microbes, functional amyloids …
Structure of the human Parkin ligase domain in an autoinhibited state
T Wauer, D Komander - The EMBO journal, 2013 - embopress.org
Mutations in the protein Parkin are associated with Parkinson's disease (PD), the second
most common neurodegenerative disease in men. Parkin is an E3 ubiquitin (Ub) ligase of …
most common neurodegenerative disease in men. Parkin is an E3 ubiquitin (Ub) ligase of …
Modelling dynamics in protein crystal structures by ensemble refinement
Single-structure models derived from X-ray data do not adequately account for the inherent,
functionally important dynamics of protein molecules. We generated ensembles of structures …
functionally important dynamics of protein molecules. We generated ensembles of structures …
Structure and assembly of the S-layer in C. difficile
Many bacteria and archaea possess a two-dimensional protein array, or S-layer, that covers
the cell surface and plays crucial roles in cell physiology. Here, we report the crystal …
the cell surface and plays crucial roles in cell physiology. Here, we report the crystal …
Improved molecular replacement by density-and energy-guided protein structure optimization
Abstract Molecular replacement,,, procedures, which search for placements of a starting
model within the crystallographic unit cell that best account for the measured diffraction …
model within the crystallographic unit cell that best account for the measured diffraction …
Assessing the utility of CASP14 models for molecular replacement
The assessment of CASP models for utility in molecular replacement is a measure of their
use in a valuable real‐world application. In CASP7, the metric for molecular replacement …
use in a valuable real‐world application. In CASP7, the metric for molecular replacement …
Structural insights into plasmalemma vesicle-associated protein (PLVAP): implications for vascular endothelial diaphragms and fenestrae
In many organs, small openings across capillary endothelial cells (ECs) allow the diffusion
of low–molecular weight compounds and small proteins between the blood and tissue …
of low–molecular weight compounds and small proteins between the blood and tissue …