What is a transcriptional burst?
E Tunnacliffe, JR Chubb - Trends in Genetics, 2020 - cell.com
The idea that gene activity can be discontinuous will not surprise many biologists–many
genes are restricted in when and where they can be expressed. Yet during the past 15 …
genes are restricted in when and where they can be expressed. Yet during the past 15 …
A DNA repair pathway can regulate transcriptional noise to promote cell fate transitions
INTRODUCTION Fluctuations have long been known to dynamically shape microstate
distributions in physical systems. Throughout engineering,“dithering” approaches that …
distributions in physical systems. Throughout engineering,“dithering” approaches that …
[HTML][HTML] Transcriptional bursting in gene expression: analytical results for general stochastic models
Gene expression in individual cells is highly variable and sporadic, often resulting in the
synthesis of mRNAs and proteins in bursts. Such bursting has important consequences for …
synthesis of mRNAs and proteins in bursts. Such bursting has important consequences for …
Markovian approaches to modeling intracellular reaction processes with molecular memory
J Zhang, T Zhou - Proceedings of the National Academy of …, 2019 - National Acad Sciences
Many cellular processes are governed by stochastic reaction events. These events do not
necessarily occur in single steps of individual molecules, and, conversely, each birth or …
necessarily occur in single steps of individual molecules, and, conversely, each birth or …
Effects of cell cycle variability on lineage and population measurements of messenger RNA abundance
R Perez-Carrasco, C Beentjes… - Journal of the Royal …, 2020 - royalsocietypublishing.org
Many models of gene expression do not explicitly incorporate a cell cycle description. Here,
we derive a theory describing how messenger RNA (mRNA) fluctuations for constitutive and …
we derive a theory describing how messenger RNA (mRNA) fluctuations for constitutive and …
Inferring transcriptional bursting kinetics from single-cell snapshot data using a generalized telegraph model
S Luo, Z Zhang, Z Wang, X Yang… - Royal Society …, 2023 - royalsocietypublishing.org
Gene expression has inherent stochasticity resulting from transcription's burst manners.
Single-cell snapshot data can be exploited to rigorously infer transcriptional burst kinetics …
Single-cell snapshot data can be exploited to rigorously infer transcriptional burst kinetics …
Analytical time-dependent distributions for gene expression models with complex promoter switching mechanisms
Classical gene expression models assume exponential switching time distributions between
the active and inactive promoter states. However, recent experiments have shown that many …
the active and inactive promoter states. However, recent experiments have shown that many …
Poisson representation: a bridge between discrete and continuous models of stochastic gene regulatory networks
Stochastic gene expression dynamics can be modelled either discretely or continuously.
Previous studies have shown that the mRNA or protein number distributions of some simple …
Previous studies have shown that the mRNA or protein number distributions of some simple …
Power-law behavior of transcriptional bursting regulated by enhancer–promoter communication
Revealing how transcriptional bursting kinetics are genomically encoded is challenging
because genome structures are stochastic at the organization level and are suggestively …
because genome structures are stochastic at the organization level and are suggestively …
Silent transcription intervals and translational bursting lead to diverse phenotypic switching
X Yang, S Luo, Z Zhang, Z Wang, T Zhou… - Physical Chemistry …, 2022 - pubs.rsc.org
Gene-expression bimodality, as a potential mechanism generating phenotypic cell diversity,
can enhance the survival of cells in a fluctuating environment. Previous studies have shown …
can enhance the survival of cells in a fluctuating environment. Previous studies have shown …