Genome evolution and the future of phylogenomics of non-avian reptiles

DC Card, WB Jennings, SV Edwards - Animals, 2023 - mdpi.com
Simple Summary As a group of organisms, non-avian reptiles, most of which are the~
11,000 species of lizards and snakes, are an extraordinarily diverse group, displaying a …

Integrating natural history collections and comparative genomics to study the genetic architecture of convergent evolution

S Lamichhaney, DC Card… - … of the Royal …, 2019 - royalsocietypublishing.org
Evolutionary convergence has been long considered primary evidence of adaptation driven
by natural selection and provides opportunities to explore evolutionary repeatability and …

Accurate detection of convergent amino-acid evolution with PCOC

C Rey, L Guéguen, M Sémon… - Molecular biology and …, 2018 - academic.oup.com
In the history of life, some phenotypes have been acquired several times independently,
through convergent evolution. Recently, lots of genome-scale studies have been devoted to …

Bayesian detection of convergent rate changes of conserved noncoding elements on phylogenetic trees

Z Hu, TB Sackton, SV Edwards… - Molecular biology and …, 2019 - academic.oup.com
Conservation of DNA sequence over evolutionary time is a strong indicator of function, and
gain or loss of sequence conservation can be used to infer changes in function across a …

A hierarchical Bayesian model for detecting convergent rate changes of conserved noncoding elements on phylogenetic trees

Z Hu, TB Sackton, SV Edwards, JS Liu - bioRxiv, 2018 - biorxiv.org
Conservation of DNA sequence over evolutionary time is a strong indicator of function, and
thus gain or loss of sequence conservation can be used to infer putative changes in function …

Integrating natural history-derived phenomics with comparative genomics to study the genetic architecture of convergent evolution

S Lamichhaney, DC Card, P Grayson, JFR Tonini… - bioRxiv, 2019 - biorxiv.org
Evolutionary convergence has been long considered primary evidence of adaptation driven
by natural selection and provides opportunities to explore evolutionary repeatability and …

[图书][B] Comparative Bioinformatic and Molecular Evolutionary Analysis of Chordate Genes and Genomes

D Northover - 2020 - search.proquest.com
As knowledge of evolutionary processes has expanded over the years, we have deepened
our understanding about how they drive organismal, cellular, and molecular biology and the …

Information integration via Bayesian and neural network models with applications to biology

J Liu, S Edwards, X Lin - 2019 - search.proquest.com
This thesis is comprised of three parts: 1) we proposed a new method to model convergent
rate changes of genomic elements on phylogenetic trees and detect the association …