How does temperature regulate anaerobic digestion?

E Nie, P He, H Zhang, L Hao, L Shao, F Lü - Renewable and Sustainable …, 2021 - Elsevier
Temperature plays a primary role in anaerobic digestion, since it shapes microbial
ecosystems, and consequently regulates the stability performance of anaerobic digestion …

Spacer acquisition by Type III CRISPR–Cas system during bacteriophage infection of Thermus thermophilus

D Artamonova, K Karneyeva, S Medvedeva… - Nucleic Acids …, 2020 - academic.oup.com
Abstract Type III CRISPR–Cas systems provide immunity to foreign DNA by targeting its
transcripts. Target recognition activates RNases and DNases that may either destroy foreign …

High‐efficiency genome editing of an extreme thermophile Thermus thermophilus using endogenous type I and type III CRISPR‐Cas systems

J Wang, J Wei, H Li, Y Li - Mlife, 2022 - Wiley Online Library
Thermus thermophilus is an attractive species in the bioindustry due to its valuable natural
products, abundant thermophilic enzymes, and promising fermentation capacities. However …

Active Transposition of Insertion Sequences in Prokaryotes: Insights from the Response of Deinococcus geothermalis to Oxidative Stress

E Shin, Q Ye, SJ Lee - Antioxidants, 2022 - mdpi.com
Bacterial genomes contain numerous insertion sequences (ISs) as transposable elements
involved in actions such as the sequestration, transmission, mutation and activation of genes …

ARAMIS: From systematic errors of NGS long reads to accurate assemblies

E Sacristán-Horcajada… - Briefings in …, 2021 - academic.oup.com
NGS long-reads sequencing technologies (or third generation) such as Pacific BioSciences
(PacBio) have revolutionized the sequencing field over the last decade improving multiple …

Transposition of Insertion Sequences was Triggered by Oxidative Stress in Radiation-Resistant Bacterium Deinococcus geothermalis

C Lee, N Choi, MK Bae, K Choo, SJ Lee - Microorganisms, 2019 - mdpi.com
During an oxidative stress-response assay on a putative Dps-like gene-disrupted Δ dgeo
_0257 mutant strain of radiation-resistant bacterium Deinococcus geothermalis, a non …

Influence of Redox Imbalances on the Transposition of Insertion Sequences in Deinococcus geothermalis

Q Ye, C Lee, E Shin, SJ Lee - Antioxidants, 2021 - mdpi.com
The transposition of insertion sequence elements was evaluated among different
Deinococcus geothermalis lineages, including the wild-type, a cystine importer-disrupted …

Prokaryotic Argonautes function beyond immunity by unlinking replicating chromosomes

DC Swarts - Cell, 2020 - cell.com
Eukaryotic Argonaute proteins strictly mediate RNA-guided RNA interference. In contrast,
prokaryotic Argonautes can utilize DNA guides to target complementary DNA sequences to …

Insertion sequence contributes to the evolution and environmental adaptation of Acidithiobacillus

S Huang, H Li, L Ma, R Liu, Y Li, H Wang, X Lu… - BMC genomics, 2023 - Springer
Abstract Background The genus Acidithiobacillus has been widely concerned due to its
superior survival and oxidation ability in acid mine drainage (AMD). However, the …

Genome Plasticity by Insertion Sequences Learned From a Case of Radiation-Resistant Bacterium Deinococcus geothermalis

C Lee, MK Bae, N Choi, SJ Lee… - … and Biology Insights, 2021 - journals.sagepub.com
The genome of the radiation-resistant bacterium Deinococcus geothermalis contains 19
types of insertion sequences (ISs), including 93 total transposases (Tpases) in 73 full-length …