Artificial intelligence in plant breeding

MA Farooq, S Gao, MA Hassan, Z Huang, A Rasheed… - Trends in Genetics, 2024 - cell.com
Harnessing cutting-edge technologies to enhance crop productivity is a pivotal goal in
modern plant breeding. Artificial intelligence (AI) is renowned for its prowess in big data …

Machine learning in plant science and plant breeding

ADJ van Dijk, G Kootstra, W Kruijer, D de Ridder - Iscience, 2021 - cell.com
Technological developments have revolutionized measurements on plant genotypes and
phenotypes, leading to routine production of large, complex data sets. This has led to …

Identification of potent antimicrobial peptides via a machine-learning pipeline that mines the entire space of peptide sequences

J Huang, Y Xu, Y Xue, Y Huang, X Li, X Chen… - Nature Biomedical …, 2023 - nature.com
Systematically identifying functional peptides is difficult owing to the vast combinatorial
space of peptide sequences. Here we report a machine-learning pipeline that mines the …

A multi-omics integrative network map of maize

L Han, W Zhong, J Qian, M Jin, P Tian, W Zhu… - Nature …, 2023 - nature.com
Networks are powerful tools to uncover functional roles of genes in phenotypic variation at a
system-wide scale. Here, we constructed a maize network map that contains the genomic …

Machine learning: its challenges and opportunities in plant system biology

M Hesami, M Alizadeh, AMP Jones… - Applied Microbiology and …, 2022 - Springer
Sequencing technologies are evolving at a rapid pace, enabling the generation of massive
amounts of data in multiple dimensions (eg, genomics, epigenomics, transcriptomic …

Epigenetic stress memory: A new approach to study cold and heat stress responses in plants

M Ramakrishnan, Z Zhang, S Mullasseri… - Frontiers in plant …, 2022 - frontiersin.org
Understanding plant stress memory under extreme temperatures such as cold and heat
could contribute to plant development. Plants employ different types of stress memories …

Systems biology for crop improvement

LT Pazhamala, H Kudapa, W Weckwerth… - The plant …, 2021 - Wiley Online Library
In recent years, generation of large‐scale data from genome, transcriptome, proteome,
metabolome, epigenome, and others, has become routine in several plant species. Most of …

Designing artificial synthetic promoters for accurate, smart, and versatile gene expression in plants

E Yasmeen, J Wang, M Riaz, L Zhang, K Zuo - Plant Communications, 2023 - cell.com
With the development of high-throughput biology techniques and artificial intelligence, it has
become increasingly feasible to design and construct artificial biological parts, modules …

Machine learning in the identification, prediction and exploration of environmental toxicology: Challenges and perspectives

X Wu, Q Zhou, L Mu, X Hu - Journal of Hazardous Materials, 2022 - Elsevier
Over the past few decades, data-driven machine learning (ML) has distinguished itself from
hypothesis-driven studies and has recently received much attention in environmental …

Integrating speed breeding with artificial intelligence for developing climate-smart crops

KK Rai - Molecular biology reports, 2022 - Springer
Introduction In climate change, breeding crop plants with improved productivity,
sustainability, and adaptability has become a daunting challenge to ensure global food …