Genomic profiling of dioecious Amaranthus species provides novel insights into species relatedness and sex genes

DA Raiyemo, LK Bobadilla, PJ Tranel - BMC biology, 2023 - Springer
Background Amaranthus L. is a diverse genus consisting of domesticated, weedy, and non-
invasive species distributed around the world. Nine species are dioecious, of which …

A generalist–specialist trade-off between switchgrass cytotypes impacts climate adaptation and geographic range

JD Napier, PP Grabowski, JT Lovell… - Proceedings of the …, 2022 - National Acad Sciences
Polyploidy results from whole-genome duplication and is a unique form of heritable variation
with pronounced evolutionary implications. Different ploidy levels, or cytotypes, can exist …

Patterns of population genomic diversity in the invasive Japanese knotweed species complex

A VanWallendael, M Alvarez… - American journal of …, 2021 - Wiley Online Library
premise Invasive species are expected to undergo a reduction in genetic diversity due to
founder effects, which should limit their ability to adapt to new habitats. Still, many invasive …

Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet

K Sielemann, N Schmidt, J Guzik, N Kalina, B Pucker… - bioRxiv, 2023 - biorxiv.org
Most crop plants, including sugar beet (Beta vulgaris subsp. vulgaris), suffer from
domestication bottlenecks and low genetic diversity caused by extensive selection for few …

[HTML][HTML] Insights into the Genomic Background of Nine Common Chinese Medicinal Plants by Flow Cytometry and Genome Survey

C An, D Li, L Lu, C Liu, X Xu, S Xie, J Wang, R Liu… - Plants, 2024 - mdpi.com
Medicinal plants have long played a crucial role in healthcare systems, but limited genomic
information on these species has impeded the integration of modern biological technologies …

Genetic Structure of the Liriope muscari Polyploid Complex and the Possibility of Its Genetic Disturbance in Japan

K Watanabe, M Yaneshita, T Denda, M Yokota… - Plants, 2022 - mdpi.com
Anthropogenic activities, such as the movement of plants through greening, can result in
genetic disturbance that can interfere with local adaptation in wild populations. Although …

k-mer-based approaches to bridging pangenomics and population genetics

MD Roberts, O Davis, EB Josephs… - arXiv preprint arXiv …, 2024 - arxiv.org
Many commonly studied species now have more than one chromosome-scale genome
assembly, revealing a large amount of genetic diversity previously missed by approaches …

Previously unmeasured genetic diversity explains part of Lewontin's paradox in a k-mer-based meta-analysis of 112 plant species

M Roberts, EB Josephs - bioRxiv, 2024 - biorxiv.org
At the molecular level, most evolution is expected to be neutral. A key prediction of this
expectation is that the level of genetic diversity in a population should scale with population …

[HTML][HTML] Predicting invasion risk of grasses in novel environments requires improved genomic understanding of adaptive potential

ES Bellis, RD Lucardi, K Saltonstall… - American Journal of …, 2022 - ncbi.nlm.nih.gov
Many invasive grasses drastically transform the ecosystems they invade, putting native
communities across the globe at risk (Fusco et al., 2019). Climate change will likely increase …

Determining population structure from k-mer frequencies.

Y Hrytsenko, NM Daniels, RS Schwartz - 2023 - researchsquare.com
Background: Understanding population structure within species provides information on
connections among different populations and how they evolve over time. This knowledge is …