Text mining and its potential applications in systems biology
With biomedical literature increasing at a rate of several thousand papers per week, it is
impossible to keep abreast of all developments; therefore, automated means to manage the …
impossible to keep abreast of all developments; therefore, automated means to manage the …
[HTML][HTML] State of the nation in data integration for bioinformatics
Data integration is a perennial issue in bioinformatics, with many systems being developed
and many technologies offered as a panacea for its resolution. The fact that it is still a …
and many technologies offered as a panacea for its resolution. The fact that it is still a …
BioMart–biological queries made easy
Background Biologists need to perform complex queries, often across a variety of
databases. Typically, each data resource provides an advanced query interface, each of …
databases. Typically, each data resource provides an advanced query interface, each of …
Taverna: a tool for the composition and enactment of bioinformatics workflows
T Oinn, M Addis, J Ferris, D Marvin, M Senger… - …, 2004 - academic.oup.com
Motivation: In silico experiments in bioinformatics involve the co-ordinated use of
computational tools and information repositories. A growing number of these resources are …
computational tools and information repositories. A growing number of these resources are …
The Arabidopsis Information Resource (TAIR): gene structure and function annotation
D Swarbreck, C Wilks, P Lamesch… - Nucleic acids …, 2007 - academic.oup.com
Abstract The Arabidopsis Information Resource (TAIR, http://arabidopsis. org) is the model
organism database for the fully sequenced and intensively studied model plant Arabidopsis …
organism database for the fully sequenced and intensively studied model plant Arabidopsis …
Taverna: lessons in creating a workflow environment for the life sciences
T Oinn, M Greenwood, M Addis… - Concurrency and …, 2006 - Wiley Online Library
Life sciences research is based on individuals, often with diverse skills, assembled into
research groups. These groups use their specialist expertise to address scientific problems …
research groups. These groups use their specialist expertise to address scientific problems …
The SOL Genomics Network. A comparative resource for Solanaceae biology and beyond
LA Mueller, TH Solow, N Taylor, B Skwarecki… - Plant …, 2005 - academic.oup.com
Abstract The SOL Genomics Network (SGN; http://sgn. cornell. edu) is a rapidly evolving
comparative resource for the plants of the Solanaceae family, which includes important crop …
comparative resource for the plants of the Solanaceae family, which includes important crop …
FlyMine: an integrated database for Drosophila and Anopheles genomics
R Lyne, R Smith, K Rutherford, M Wakeling, A Varley… - Genome biology, 2007 - Springer
FlyMine is a data warehouse that addresses one of the important challenges of modern
biology: how to integrate and make use of the diversity and volume of current biological …
biology: how to integrate and make use of the diversity and volume of current biological …
The biomolecular interaction network database and related tools 2005 update
C Alfarano, CE Andrade, K Anthony… - Nucleic acids …, 2005 - academic.oup.com
Abstract The Biomolecular Interaction Network Database (BIND)(http://bind. ca) archives
biomolecular interaction, reaction, complex and pathway information. Our aim is to curate …
biomolecular interaction, reaction, complex and pathway information. Our aim is to curate …
myExperiment: a repository and social network for the sharing of bioinformatics workflows
Abstract myExperiment (http://www. myexperiment. org) is an online research environment
that supports the social sharing of bioinformatics workflows. These workflows are …
that supports the social sharing of bioinformatics workflows. These workflows are …