Text mining and its potential applications in systems biology

S Ananiadou, DB Kell, J Tsujii - Trends in biotechnology, 2006 - cell.com
With biomedical literature increasing at a rate of several thousand papers per week, it is
impossible to keep abreast of all developments; therefore, automated means to manage the …

[HTML][HTML] State of the nation in data integration for bioinformatics

C Goble, R Stevens - Journal of biomedical informatics, 2008 - Elsevier
Data integration is a perennial issue in bioinformatics, with many systems being developed
and many technologies offered as a panacea for its resolution. The fact that it is still a …

BioMart–biological queries made easy

D Smedley, S Haider, B Ballester, R Holland, D London… - BMC genomics, 2009 - Springer
Background Biologists need to perform complex queries, often across a variety of
databases. Typically, each data resource provides an advanced query interface, each of …

Taverna: a tool for the composition and enactment of bioinformatics workflows

T Oinn, M Addis, J Ferris, D Marvin, M Senger… - …, 2004 - academic.oup.com
Motivation: In silico experiments in bioinformatics involve the co-ordinated use of
computational tools and information repositories. A growing number of these resources are …

The Arabidopsis Information Resource (TAIR): gene structure and function annotation

D Swarbreck, C Wilks, P Lamesch… - Nucleic acids …, 2007 - academic.oup.com
Abstract The Arabidopsis Information Resource (TAIR, http://arabidopsis. org) is the model
organism database for the fully sequenced and intensively studied model plant Arabidopsis …

Taverna: lessons in creating a workflow environment for the life sciences

T Oinn, M Greenwood, M Addis… - Concurrency and …, 2006 - Wiley Online Library
Life sciences research is based on individuals, often with diverse skills, assembled into
research groups. These groups use their specialist expertise to address scientific problems …

The SOL Genomics Network. A comparative resource for Solanaceae biology and beyond

LA Mueller, TH Solow, N Taylor, B Skwarecki… - Plant …, 2005 - academic.oup.com
Abstract The SOL Genomics Network (SGN; http://sgn. cornell. edu) is a rapidly evolving
comparative resource for the plants of the Solanaceae family, which includes important crop …

FlyMine: an integrated database for Drosophila and Anopheles genomics

R Lyne, R Smith, K Rutherford, M Wakeling, A Varley… - Genome biology, 2007 - Springer
FlyMine is a data warehouse that addresses one of the important challenges of modern
biology: how to integrate and make use of the diversity and volume of current biological …

The biomolecular interaction network database and related tools 2005 update

C Alfarano, CE Andrade, K Anthony… - Nucleic acids …, 2005 - academic.oup.com
Abstract The Biomolecular Interaction Network Database (BIND)(http://bind. ca) archives
biomolecular interaction, reaction, complex and pathway information. Our aim is to curate …

myExperiment: a repository and social network for the sharing of bioinformatics workflows

CA Goble, J Bhagat, S Aleksejevs… - Nucleic acids …, 2010 - academic.oup.com
Abstract myExperiment (http://www. myexperiment. org) is an online research environment
that supports the social sharing of bioinformatics workflows. These workflows are …