Eukaryotic splicing machinery in the plant–virus battleground

CF Su, D Das, M Muhammad Aslam… - Wiley …, 2023 - Wiley Online Library
Plant virual infections are mainly caused by plant‐virus parasitism which affects ecological
communities. Some viruses are highly pathogen specific that can infect only specific plants …

A long non‐coding apple RNA, MSTRG.85814.11, acts as a transcriptional enhancer of SAUR32 and contributes to the Fe‐deficiency response

Y Sun, P Hao, X Lv, J Tian, Y Wang, X Zhang… - The Plant …, 2020 - Wiley Online Library
Iron (Fe) is an essential plant nutrient and its deficiency typically limits plant growth. Long
non‐coding (lnc) RNAs are involved in adaptive responses to nutrient stress; however, it is …

A genomic view of alternative splicing of long non-coding RNAs during rice seed development reveals extensive splicing and lncRNA gene families

EA Kiegle, A Garden, E Lacchini… - Frontiers in plant science, 2018 - frontiersin.org
Alternative splicing (AS) is a key modulator of development in many eukaryotic organisms. In
plants, alternative splice forms of non-coding RNAs (ncRNAs) are known to modulate …

Decoys provide a scalable platform for the identification of plant E3 ubiquitin ligases that regulate circadian function

A Feke, W Liu, J Hong, MW Li, CM Lee, EK Zhou… - Elife, 2019 - elifesciences.org
The circadian clock relies on regulated degradation of clock proteins to maintain rhythmicity.
Despite this, we know few components that mediate protein degradation. This is due to high …

How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY)

AB James, CPG Calixto, NA Tzioutziou… - Plant, cell & …, 2018 - Wiley Online Library
One of the ways in which plants can respond to temperature is via alternative splicing (AS).
Previous work showed that temperature changes affected the splicing of several circadian …

New era in plant alternative splicing analysis enabled by advances in high-throughput sequencing (HTS) technologies

R Bedre, S Irigoyen, E Petrillo… - Frontiers in Plant Science, 2019 - frontiersin.org
Alternative splicing (AS) is a crucial posttranscriptional mechanism of gene expression
which promotes transcriptome and proteome diversity. At the molecular level, splicing and …

REVEILLE2 thermosensitive splicing: a molecular basis for the integration of nocturnal temperature information by the Arabidopsis circadian clock

AB James, C Sharples, J Laird, EM Armstrong… - New …, 2024 - Wiley Online Library
Cold stress is one of the major environmental factors that limit growth and yield of plants.
However, it is still not fully understood how plants account for daily temperature fluctuations …

Functional Validation of Different Alternative Splicing Variants of the Chrysanthemum lavandulifolium ClNUM1 Gene in Tobacco

W Zhang, H Wang, Y Guo, X Hao, Y Li, W He… - Current Issues in …, 2024 - mdpi.com
The Asteraceae are widely distributed throughout the world, with diverse functions and large
genomes. Many of these genes remain undiscovered and unstudied. In this study, we …

Why lncRNAs were not conserved? Is it for adaptation?

E Karlık - Frontiers in Life Sciences and Related Technologies, 2021 - dergipark.org.tr
Plants are sessile organisms affected by changing environment, especially biotic and abiotic
stress. Long non-coding RNAs (lncRNAs) became prominent as crucial regulators in diverse …

Decoys provide a scalable platform for the genetic analysis of plant E3 ubiquitin ligases that regulate circadian clock function

A Feke, W Liu, J Hong, MW Li, CM Lee, E Zhou… - bioRxiv, 2018 - biorxiv.org
The circadian clock in all eukaryotes relies on the regulated degradation of clock proteins to
maintain 24-hour rhythmicity. Despite this knowledge, we know very few of the components …