Polyploidy: its consequences and enabling role in plant diversification and evolution

JS Heslop-Harrison, T Schwarzacher, Q Liu - Annals of Botany, 2023 - academic.oup.com
Background Most, if not all, green plant (Virdiplantae) species including angiosperms and
ferns are polyploids themselves or have ancient polyploid or whole genome duplication …

Pervasive genome duplications across the plant tree of life and their links to major evolutionary innovations and transitions

X Qiao, S Zhang, AH Paterson - Computational and structural …, 2022 - Elsevier
Whole-genome duplication (WGD) has occurred repeatedly during plant evolution and
diversification, providing genetic layers for evolving new functions and phenotypes …

Phylotranscriptomics illuminates the placement of whole genome duplications and gene retention in ferns

JA Pelosi, EH Kim, WB Barbazuk… - Frontiers in Plant Science, 2022 - frontiersin.org
Ferns are the second largest clade of vascular plants with over 10,000 species, yet the
generation of genomic resources for the group has lagged behind other major clades of …

Genomic Insights into Genetic Diploidization in the Homosporous Fern Adiantum nelumboides

Y Zhong, Y Liu, W Wu, J Chen, C Sun… - Genome biology and …, 2022 - academic.oup.com
Whole-genome duplication has been recognized as a major process in speciation of land
plants, especially in ferns. Whereas genome downsizing contributes greatly to the post …

A 160 Gbp fork fern genome shatters size record for eukaryotes

P Fernández, R Amice, D Bruy, MJM Christenhusz… - iScience, 2024 - cell.com
Vascular plants are exceptional among eukaryotes due to their outstanding genome size
diversity which ranges∼ 2,400-fold, including the largest genome so far recorded in the …

Centromere drive may propel the evolution of chromosome and genome size in plants

K Plačková, P Bureš, MA Lysak, F Zedek - Annals of Botany, 2024 - academic.oup.com
Background Genome size is influenced by natural selection and genetic drift acting on
variations from polyploidy and repetitive DNA sequences. We hypothesized that centromere …

[HTML][HTML] Genome size evolution of the extant lycophytes and ferns

FG Wang, AH Wang, CK Bai, DM Jin, LY Nie, AJ Harris… - Plant Diversity, 2022 - Elsevier
Ferns and lycophytes have remarkably large genomes. However, little is known about how
their genome size evolved in fern lineages. To explore the origins and evolution of …

Organellar phylogenomics of Ophioglossaceae fern genera

LY Kuo, HJ Su, D Koubínová, PJ Xie… - Frontiers in Plant …, 2024 - frontiersin.org
Previous phylogenies showed conflicting relationships among the subfamilies and genera
within the fern family Ophioglossaceae. However, their classification remains unsettled …

Revisiting ancient polyploidy in leptosporangiate ferns

H Chen, Y Fang, A Zwaenepoel, S Huang… - New …, 2023 - Wiley Online Library
Ferns, and particularly homosporous ferns, have long been assumed to have experienced
recurrent whole‐genome duplication (WGD) events because of their substantially large …

Modified CTAB protocols for high‐molecular‐weight DNA extractions from ferns

PJ Xie, YT Ke, LY Kuo - Applications in Plant Sciences, 2023 - Wiley Online Library
Premise Efficient protocols for extracting high‐molecular‐weight (HMW) DNA from ferns
facilitate the long‐read sequencing of their large and complex genomes. Here, we perform …