Proteomics of human biological fluids for biomarker discoveries: technical advances and recent applications
L Dayon, O Cominetti, M Affolter - Expert review of proteomics, 2022 - Taylor & Francis
Introduction Biological fluids are routine samples for diagnostic testing and monitoring.
Blood samples are typically measured because of their moderate invasive collection and …
Blood samples are typically measured because of their moderate invasive collection and …
Quantitation in mass-spectrometry-based proteomics
WX Schulze, B Usadel - Annual review of plant biology, 2010 - annualreviews.org
Mass-spectrometry-based proteomics, the large-scale analysis of proteins by mass
spectrometry, has emerged as a new technology over the last decade and become routine …
spectrometry, has emerged as a new technology over the last decade and become routine …
A systematic evaluation of normalization methods in quantitative label-free proteomics
To date, mass spectrometry (MS) data remain inherently biased as a result of reasons
ranging from sample handling to differences caused by the instrumentation. Normalization is …
ranging from sample handling to differences caused by the instrumentation. Normalization is …
Comparative analysis of proteome and transcriptome variation in mouse
The relationships between the levels of transcripts and the levels of the proteins they encode
have not been examined comprehensively in mammals, although previous work in plants …
have not been examined comprehensively in mammals, although previous work in plants …
Normalization and missing value imputation for label-free LC-MS analysis
Shotgun proteomic data are affected by a variety of known and unknown systematic biases
as well as high proportions of missing values. Typically, normalization is performed in an …
as well as high proportions of missing values. Typically, normalization is performed in an …
Normalyzer: a tool for rapid evaluation of normalization methods for omics data sets
A Chawade, E Alexandersson… - Journal of proteome …, 2014 - ACS Publications
High-throughput omics data often contain systematic biases introduced during various steps
of sample processing and data generation. As the source of these biases is usually …
of sample processing and data generation. As the source of these biases is usually …
The pathogenesis and pathophysiology of gestational diabetes mellitus: Deductions from a three-part longitudinal metabolomics study in China
KP Law, H Zhang - Clinica Chimica Acta, 2017 - Elsevier
Gestational diabetes mellitus (GDM) is a form of diabetes that is first recognised during
pregnancy, with no evidence of pre-existing type 1 or type 2 diabetes. The prevalence of …
pregnancy, with no evidence of pre-existing type 1 or type 2 diabetes. The prevalence of …
[HTML][HTML] Liquid chromatography mass spectrometry-based proteomics: biological and technological aspects
Mass spectrometry-based proteomics has become the tool of choice for identifying and
quantifying the proteome of an organism. Though recent years have seen a tremendous …
quantifying the proteome of an organism. Though recent years have seen a tremendous …
Pharmacometabonomics: data processing and statistical analysis
J Fu, Y Zhang, J Liu, X Lian, J Tang… - Briefings in …, 2021 - academic.oup.com
Individual variations in drug efficacy, side effects and adverse drug reactions are still
challenging that cannot be ignored in drug research and development. The aim of …
challenging that cannot be ignored in drug research and development. The aim of …
A comprehensive evaluation of popular proteomics software workflows for label-free proteome quantification and imputation
Label-free mass spectrometry (MS) has developed into an important tool applied in various
fields of biological and life sciences. Several software exist to process the raw MS data into …
fields of biological and life sciences. Several software exist to process the raw MS data into …