[HTML][HTML] Whole genome sequencing options for bacterial strain typing and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene …
Background Whole genome sequence (WGS)-based strain typing finds increasing use in the
epidemiologic analysis of bacterial pathogens in both public health as well as more …
epidemiologic analysis of bacterial pathogens in both public health as well as more …
The current status on the taxonomy of Pseudomonas revisited: an update
The genus Pseudomonas described in 1894 is one of the most diverse and ubiquitous
bacterial genera which encompass species isolated worldwide. In the last years more than …
bacterial genera which encompass species isolated worldwide. In the last years more than …
[HTML][HTML] Antibiotic resistance: What is so special about multidrug-resistant Gram-negative bacteria?
M Exner, S Bhattacharya, B Christiansen… - GMS hygiene and …, 2017 - ncbi.nlm.nih.gov
In the past years infections caused by multidrug-resistant Gram-negative bacteria have
dramatically increased in all parts of the world. This consensus paper is based on …
dramatically increased in all parts of the world. This consensus paper is based on …
Efflux Pump-Driven Antibiotic and Biocide Cross-Resistance in Pseudomonas aeruginosa Isolated from Different Ecological Niches: A Case Study in the …
A Amsalu, SA Sapula, M De Barros Lopes, BJ Hart… - Microorganisms, 2020 - mdpi.com
Pseudomonas aeruginosa is an opportunistic pathogen displaying high intrinsic
antimicrobial resistance and the ability to thrive in different ecological environments. In this …
antimicrobial resistance and the ability to thrive in different ecological environments. In this …
Combination of whole genome sequencing and metagenomics for microbiological diagnostics
Whole genome sequencing (WGS) provides the highest resolution for genome-based
species identification and can provide insight into the antimicrobial resistance and virulence …
species identification and can provide insight into the antimicrobial resistance and virulence …
Outbreak of Pseudomonas aeruginosa producing VIM carbapenemase in an intensive care unit and its termination by implementation of waterless patient care
G Catho, R Martischang, F Boroli, MN Chraïti, Y Martin… - Critical Care, 2021 - Springer
Background Long-term outbreaks of multidrug-resistant Gram-negative bacilli related to
hospital-building water systems have been described. However, successful mitigation …
hospital-building water systems have been described. However, successful mitigation …
Bacterial genome sequencing in clinical microbiology: a pathogen-oriented review
In recent years, whole-genome sequencing (WGS) has been perceived as a technology with
the potential to revolutionise clinical microbiology. Herein, we reviewed the literature on the …
the potential to revolutionise clinical microbiology. Herein, we reviewed the literature on the …
Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital: an observational study using whole-genome sequencing
Objectives Pseudomonas aeruginosa is a common nosocomial pathogen responsible for
significant morbidity and mortality internationally. Patients may become colonised or infected …
significant morbidity and mortality internationally. Patients may become colonised or infected …
KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes
Background High-throughput DNA sequencing produces vast amounts of data, with millions
of short reads that usually have to be mapped to a reference genome or newly assembled …
of short reads that usually have to be mapped to a reference genome or newly assembled …
Prevalence and risk factors associated with colonization and infection of extensively drug-resistant Pseudomonas aeruginosa: a systematic review
M Buhl, S Peter, M Willmann - Expert review of anti-infective …, 2015 - Taylor & Francis
Pseudomonas aeruginosa is a Gram-negative human pathogen with extensively drug-
resistant (XDR) strains emerging in hospitals across the globe. This systematic review is …
resistant (XDR) strains emerging in hospitals across the globe. This systematic review is …