Stepping on the gas to a circular economy: accelerating development of carbon-negative chemical production from gas fermentation
N Fackler, BD Heijstra, BJ Rasor… - Annual review of …, 2021 - annualreviews.org
Owing to rising levels of greenhouse gases in our atmosphere and oceans, climate change
poses significant environmental, economic, and social challenges globally. Technologies …
poses significant environmental, economic, and social challenges globally. Technologies …
NADPH-generating systems in bacteria and archaea
SK Spaans, RA Weusthuis, J Van Der Oost… - Frontiers in …, 2015 - frontiersin.org
Reduced nicotinamide adenine dinucleotide phosphate (NADPH) is an essential electron
donor in all organisms. It provides the reducing power that drives numerous anabolic …
donor in all organisms. It provides the reducing power that drives numerous anabolic …
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0
Constraint-based reconstruction and analysis (COBRA) provides a molecular mechanistic
framework for integrative analysis of experimental molecular systems biology data and …
framework for integrative analysis of experimental molecular systems biology data and …
eQuilibrator 3.0: a database solution for thermodynamic constant estimation
ME Beber, MG Gollub, D Mozaffari… - Nucleic acids …, 2022 - academic.oup.com
Abstract eQuilibrator (equilibrator. weizmann. ac. il) is a database of biochemical equilibrium
constants and Gibbs free energies, originally designed as a web-based interface. While the …
constants and Gibbs free energies, originally designed as a web-based interface. While the …
Recon3D enables a three-dimensional view of gene variation in human metabolism
Genome-scale network reconstructions have helped uncover the molecular basis of
metabolism. Here we present Recon3D, a computational resource that includes three …
metabolism. Here we present Recon3D, a computational resource that includes three …
Fast automated reconstruction of genome-scale metabolic models for microbial species and communities
D Machado, S Andrejev, M Tramontano… - Nucleic acids …, 2018 - academic.oup.com
Genome-scale metabolic models are instrumental in uncovering operating principles of
cellular metabolism, for model-guided re-engineering, and unraveling cross-feeding in …
cellular metabolism, for model-guided re-engineering, and unraveling cross-feeding in …
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
Genome-scale metabolic models derived from human gut metagenomic data can be used
as a framework to elucidate how microbial communities modulate human metabolism and …
as a framework to elucidate how microbial communities modulate human metabolism and …
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease
A multitude of factors contribute to complex diseases and can be measured with 'omics'
methods. Databases facilitate data interpretation for underlying mechanisms. Here, we …
methods. Databases facilitate data interpretation for underlying mechanisms. Here, we …
A new-to-nature carboxylation module to improve natural and synthetic CO2 fixation
M Scheffen, DG Marchal, T Beneyton, SK Schuller… - Nature Catalysis, 2021 - nature.com
The capture of CO2 by carboxylases is key to sustainable biocatalysis and a carbon-neutral
bio-economy, yet currently limited to few naturally existing enzymes. Here, we developed …
bio-economy, yet currently limited to few naturally existing enzymes. Here, we developed …
Construction and modular implementation of the THETA cycle for synthetic CO2 fixation
Synthetic biology offers the opportunity to build solutions for improved capture and
conversion of carbon dioxide (CO2) that outcompete those evolved by nature. Here we …
conversion of carbon dioxide (CO2) that outcompete those evolved by nature. Here we …