Design of experiments as a tool for optimization in recombinant protein biotechnology: from constructs to crystals

C Papaneophytou - Molecular Biotechnology, 2019 - Springer
In this review, the basic concepts and applications of design of experiments (DoE) in
recombinant protein biotechnology will be discussed. The production of recombinant …

What's happened over the last five years with high-throughput protein crystallization screening?

Y Lin - Expert Opinion on Drug Discovery, 2018 - Taylor & Francis
Structure-based drug design (SBDD) heavily relies on the production of high-resolution (<
2Å) three-dimensional (3D) structures of the drug target in the presence or absence of the …

Ionic liquids as protein crystallization additives

CL Tarver, Q Yuan, ML Pusey - Crystals, 2021 - mdpi.com
Among its attributes, the mythical philosopher's stone is supposedly capable of turning base
metals to gold or silver. In an analogous fashion, we are finding that protein crystallization …

Feature analysis for classification of trace fluorescent labeled protein crystallization images

M Sigdel, I Dinc, MS Sigdel, S Dinc, ML Pusey… - BioData mining, 2017 - Springer
Background Large number of features are extracted from protein crystallization trial images
to improve the accuracy of classifiers for predicting the presence of crystals or phases of the …

Schema matching and data integration with consistent naming on protein crystallization screens

M Shrestha, TX Tran, B Bhattarai… - … ACM transactions on …, 2019 - ieeexplore.ieee.org
The data representation as well as naming conventions used in commercial screen files by
different companies make the automated analysis of crystallization experiments difficult and …

Multimedia retrieval that works

R Aygun, W Benesova - 2018 IEEE conference on multimedia …, 2018 - ieeexplore.ieee.org
Multimedia information retrieval has been a challenging problem due to the diversity and
size of multimedia data along with difficulty of expressing desired queries. This paper …

An Analysis on Commercial Screening Kits and Chemical Components in Biomacromolecular Crystallization Screening

W Qin, SX Xie, J Zhang, D Zhao, CX He… - Crystal Research …, 2019 - Wiley Online Library
Obtaining diffraction‐quality crystals is still a bottleneck for biomacromolecular structure
determination using X‐ray diffraction. In practice, the bottleneck mainly comprises two …

Optimizing genetic algorithm for protein crystallization screening using an exploratory fitness function

B Bhattarai, M Shrestha, RS Aygun… - … on Bioinformatics and …, 2017 - ieeexplore.ieee.org
Protein crystallization is the process of formation of protein crystals. Many combinations of
chemicals need to be tried to obtain a crystal for some difficult proteins. This paper discusses …

GenScreen: A genetic algorithm for protein crystallization screening

S Acharya - 2016 - louis.uah.edu
Protein crystallization screening focuses on determining the factors crucial for successful
protein crystallization. Protein crystallization may require large number of parameters to be …

Visual-x2: interactive visualization and analysis tool for protein crystallization

S Subedi, I Dinc, TX Tran, D Sharma… - … Modeling Analysis in …, 2020 - Springer
In high-throughput systems, the crystallization experiments require the inspection and
analysis of a large number of trial images. The visualization and analysis tools are needed …