Quantitative mass spectrometry in proteomics: a critical review

M Bantscheff, M Schirle, G Sweetman, J Rick… - Analytical and …, 2007 - Springer
The quantification of differences between two or more physiological states of a biological
system is among the most important but also most challenging technical tasks in proteomics …

Proteomics: a pragmatic perspective

P Mallick, B Kuster - Nature biotechnology, 2010 - nature.com
The evolution of mass spectrometry–based proteomic technologies has advanced our
understanding of the complex and dynamic nature of proteomes while concurrently …

Systematic analysis of protein turnover in primary cells

T Mathieson, H Franken, J Kosinski, N Kurzawa… - Nature …, 2018 - nature.com
A better understanding of proteostasis in health and disease requires robust methods to
determine protein half-lives. Here we improve the precision and accuracy of peptide ion …

Increasing the multiplexing capacity of TMTs using reporter ion isotopologues with isobaric masses

GC McAlister, EL Huttlin, W Haas, L Ting… - Analytical …, 2012 - ACS Publications
Quantitative mass spectrometry methods offer near-comprehensive proteome coverage;
however, these methods still suffer with regards to sample throughput. Multiplex quantitation …

Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics

PJ Boersema, R Raijmakers, S Lemeer… - Nature protocols, 2009 - nature.com
Accurate quantification of protein expression in biological systems is an increasingly
important part of proteomics research. Incorporation of differential stable isotopes in samples …

Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics

A Prudova, U auf dem Keller, GS Butler… - Molecular & Cellular …, 2010 - ASBMB
Proteolysis is a major protein posttranslational modification that, by altering protein structure,
affects protein function and, by truncating the protein sequence, alters peptide signatures of …

N,N-Dimethyl Leucines as Novel Isobaric Tandem Mass Tags for Quantitative Proteomics and Peptidomics

F Xiang, H Ye, R Chen, Q Fu, L Li - Analytical chemistry, 2010 - ACS Publications
Herein, we describe the development and application of a set of novel N, N-dimethyl leucine
(DiLeu) 4-plex isobaric tandem mass (MS2) tagging reagents with high quantitation efficacy …

Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates

PJ Boersema, TT Aye, TAB van Veen, AJR Heck… - …, 2008 - Wiley Online Library
Stable isotope labeling is at present one of the most powerful methods in quantitative
proteomics. Stable isotope labeling has been performed at both the protein as well as the …

[图书][B] Handbook of biochemistry and molecular biology

RL Lundblad, F Macdonald - 2018 - books.google.com
Edited by renowned protein scientist and bestselling author Roger L. Lundblad, with the
assistance of Fiona M. Macdonald of CRC Press, this fifth edition of the Handbook of …

Recent advances in peptide separation by multidimensional liquid chromatography for proteome analysis

S Di Palma, ML Hennrich, AJR Heck, S Mohammed - Journal of proteomics, 2012 - Elsevier
Shotgun proteomics dominates the field of proteomics. The foundations of the strategy
consist of multiple rounds of peptide separation where chromatography provides the …