Lost in parameter space: a road map for stacks
JR Paris, JR Stevens… - Methods in Ecology and …, 2017 - Wiley Online Library
Restriction site‐Associated DNA sequencing (RAD‐seq) has become a widely adopted
method for genotyping populations of model and non‐model organisms. Generating a …
method for genotyping populations of model and non‐model organisms. Generating a …
Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters
Phylogenetic relationships of snailfishes of the family Liparidae were analyzed on the basis
of two sets of molecular sequence data: one from the mitochondrial DNA cytochrome c …
of two sets of molecular sequence data: one from the mitochondrial DNA cytochrome c …
Unravelling the Genetic Diversity among Cassava Bemisia tabaci Whiteflies Using NextRAD Sequencing
Bemisia tabaci threatens production of cassava in Africa through vectoring viruses that
cause cassava mosaic disease (CMD) and cassava brown streak disease (CBSD). B. tabaci …
cause cassava mosaic disease (CMD) and cassava brown streak disease (CBSD). B. tabaci …
Simulation with RADinitio improves RADseq experimental design and sheds light on sources of missing data
AG Rivera‐Colón, NC Rochette… - Molecular ecology …, 2021 - Wiley Online Library
Restriction‐site associated DNA sequencing (RADseq) has become a powerful and
versatile tool in modern population genomics, enabling large‐scale evolutionary and …
versatile tool in modern population genomics, enabling large‐scale evolutionary and …
[HTML][HTML] How challenging RADseq data turned out to favor coalescent-based species tree inference. A case study in Aichryson (Crassulaceae)
P Hühn, MS Dillenberger, M Gerschwitz-Eidt… - Molecular Phylogenetics …, 2022 - Elsevier
Analysing multiple genomic regions while incorporating detection and qualification of
discordance among regions has become standard for understanding phylogenetic …
discordance among regions has become standard for understanding phylogenetic …
Enigmatic incongruence between mtDNA and nDNA revealed by multi-locus phylogenomic analyses in freshwater snails
Phylogenetic incongruence has frequently been encountered among different molecular
markers. Recent progress in molecular phylogenomics has provided detailed and important …
markers. Recent progress in molecular phylogenomics has provided detailed and important …
Genotype‐free estimation of allele frequencies reduces bias and improves demographic inference from RADSeq data
VM Warmuth, H Ellegren - Molecular Ecology Resources, 2019 - Wiley Online Library
Restriction‐site associated DNA sequencing (RADSeq) facilitates rapid generation of
thousands of genetic markers at relatively low cost; however, several sources of error …
thousands of genetic markers at relatively low cost; however, several sources of error …
Evolving in the darkness: phylogenomics of Sinocyclocheilus cavefishes highlights recent diversification and cryptic diversity
T Mao, Y Liu, MM Vasconcellos, MR Pie… - Molecular Phylogenetics …, 2022 - Elsevier
Troglomorphism—any morphological adaptation enabling life to the constant darkness of
caves, such as loss of pigment, reduced eyesight or blindness, over-developed tactile and …
caves, such as loss of pigment, reduced eyesight or blindness, over-developed tactile and …
Selected wildlife trematodes
MG Bolek, JT Detwiler, HA Stigge - Digenetic Trematodes, 2019 - Springer
The trematodes are a species-rich group of parasites, with some estimates suggesting that
there are more than 24,000 species. However, recent interests on the biology of trematodes …
there are more than 24,000 species. However, recent interests on the biology of trematodes …
Phylogeny, Taxonomy, and Biogeography of Pterocarya (Juglandaceae)
Relict species play an important role in understanding the biogeography of intercontinental
disjunctions. Pterocarya (a relict genus) is the valuable model taxon for studying the …
disjunctions. Pterocarya (a relict genus) is the valuable model taxon for studying the …