Semiempirical quantum mechanical methods for noncovalent interactions for chemical and biochemical applications
Semiempirical (SE) methods can be derived from either Hartree–Fock or density functional
theory by applying systematic approximations, leading to efficient computational schemes …
theory by applying systematic approximations, leading to efficient computational schemes …
[HTML][HTML] Enhanced semiempirical QM methods for biomolecular interactions
ND Yilmazer, M Korth - Computational and structural biotechnology journal, 2015 - Elsevier
Recent successes and failures of the application of 'enhanced'semiempirical QM (SQM)
methods are reviewed in the light of the benefits and backdraws of adding dispersion (D) …
methods are reviewed in the light of the benefits and backdraws of adding dispersion (D) …
Extension of the self-consistent-charge density-functional tight-binding method: third-order expansion of the density functional theory total energy and introduction of a …
The standard self-consistent-charge density-functional-tight-binding (SCC-DFTB) method
(Phys. Rev. B 1998, 58, 7260) is derived by a second-order expansion of the density …
(Phys. Rev. B 1998, 58, 7260) is derived by a second-order expansion of the density …
A transferable H-bonding correction for semiempirical quantum-chemical methods
Semiempirical methods could offer a feasible compromise between ab initio and empirical
approaches for the calculation of large molecules with biological relevance. A key problem …
approaches for the calculation of large molecules with biological relevance. A key problem …
Third-generation hydrogen-bonding corrections for semiempirical QM methods and force fields
M Korth - Journal of Chemical Theory and Computation, 2010 - ACS Publications
Computational modeling of biological systems is a rapidly evolving field that calls for
methods that are able to allow for extensive sampling with systems consisting of thousands …
methods that are able to allow for extensive sampling with systems consisting of thousands …
PDDG/PM3 and PDDG/MNDO: improved semiempirical methods
MP Repasky, J Chandrasekhar… - Journal of …, 2002 - Wiley Online Library
Two new semiempirical methods employing a Pairwise Distance Directed Gaussian
modification have been developed: PDDG/PM3 and PDDG/MNDO; they are easily …
modification have been developed: PDDG/PM3 and PDDG/MNDO; they are easily …
An efficient linear-scaling Ewald method for long-range electrostatic interactions in combined QM/MM calculations
A method is presented for the efficient evaluation of long-range electrostatic forces in
combined quantum mechanical and molecular mechanical (QM/MM) calculations of periodic …
combined quantum mechanical and molecular mechanical (QM/MM) calculations of periodic …
A critical assessment of two-body and three-body interactions in water
The microscopic behavior of water under different conditions and in different environments
remains the subject of intense debate. A great number of the controversies arise due to the …
remains the subject of intense debate. A great number of the controversies arise due to the …
Specific reaction parametrization of the AM1/d Hamiltonian for phosphoryl transfer reactions: H, O, and P atoms
A semiempirical AM1/d Hamiltonian is developed to model phosphoryl transfer reactions
catalyzed by enzymes and ribozymes for use in linear-scaling calculations and combined …
catalyzed by enzymes and ribozymes for use in linear-scaling calculations and combined …
Structure, energy, vibrational spectrum, and Bader's analysis of π⋯ H hydrogen bonds and H− δ⋯ H+ δ dihydrogen bonds
BG de Oliveira - Physical Chemistry Chemical Physics, 2013 - pubs.rsc.org
In this paper, the intermolecular structural study asserted by the vibrational analysis in the
stretch frequencies of hydrogen bonds (π⋯ H) and dihydrogen bonds (H− δ⋯ H+ δ) have …
stretch frequencies of hydrogen bonds (π⋯ H) and dihydrogen bonds (H− δ⋯ H+ δ) have …