Next-generation transcriptome assembly
JA Martin, Z Wang - Nature Reviews Genetics, 2011 - nature.com
Transcriptomics studies often rely on partial reference transcriptomes that fail to capture the
full catalogue of transcripts and their variations. Recent advances in sequencing …
full catalogue of transcripts and their variations. Recent advances in sequencing …
Measuring differential gene expression with RNA-seq: challenges and strategies for data analysis
F Finotello, B Di Camillo - Briefings in functional genomics, 2015 - academic.oup.com
RNA-seq is a methodology for RNA profiling based on next-generation sequencing that
enables to measure and compare gene expression patterns at unprecedented resolution …
enables to measure and compare gene expression patterns at unprecedented resolution …
ANOVA-like differential expression (ALDEx) analysis for mixed population RNA-Seq
AD Fernandes, JM Macklaim, TG Linn, G Reid… - PloS one, 2013 - journals.plos.org
Experimental variance is a major challenge when dealing with high-throughput sequencing
data. This variance has several sources: sampling replication, technical replication …
data. This variance has several sources: sampling replication, technical replication …
Variation in thermal performance among insect populations
BJ Sinclair, CM Williams… - Physiological and …, 2012 - journals.uchicago.edu
Among-population variation in insect thermal performance is important for understanding
patterns and mechanisms of evolution and predicting insect responses to altered climate …
patterns and mechanisms of evolution and predicting insect responses to altered climate …
Transcriptome profiling of chemosensory appendages in the malaria vector Anopheles gambiae reveals tissue- and sex-specific signatures of odor coding
Background Chemosensory signal transduction guides the behavior of many insects,
including Anopheles gambiae, the major vector for human malaria in sub-Saharan Africa. To …
including Anopheles gambiae, the major vector for human malaria in sub-Saharan Africa. To …
The highly polymorphic CYP6M7 cytochrome P450 gene partners with the directionally selected CYP6P9a and CYP6P9b genes to expand the pyrethroid resistance front in the …
Background Pyrethroid resistance in the major malaria vector Anopheles funestus is rapidly
expanding across Southern Africa. It remains unknown whether this resistance has a unique …
expanding across Southern Africa. It remains unknown whether this resistance has a unique …
RNA-Seq and molecular docking reveal multi-level pesticide resistance in the bed bug
Abstract Background Bed bugs (Cimex lectularius) are hematophagous nocturnal parasites
of humans that have attained high impact status due to their worldwide resurgence. The …
of humans that have attained high impact status due to their worldwide resurgence. The …
Rapid seasonal evolution in innate immunity of wild Drosophila melanogaster
Understanding the rate of evolutionary change and the genetic architecture that facilitates
rapid adaptation is a current challenge in evolutionary biology. Comparative studies show …
rapid adaptation is a current challenge in evolutionary biology. Comparative studies show …
De Novo Sequencing and Characterization of the Floral Transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae)
Background Transcriptome sequencing can be used to determine gene sequences and
transcript abundance in non-model species, and the advent of next-generation sequencing …
transcript abundance in non-model species, and the advent of next-generation sequencing …
De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum
Background Because of their phylogenetic position and unique characteristics of their
biology and life cycle, ferns represent an important lineage for studying the evolution of land …
biology and life cycle, ferns represent an important lineage for studying the evolution of land …