Next-generation transcriptome assembly

JA Martin, Z Wang - Nature Reviews Genetics, 2011 - nature.com
Transcriptomics studies often rely on partial reference transcriptomes that fail to capture the
full catalogue of transcripts and their variations. Recent advances in sequencing …

Measuring differential gene expression with RNA-seq: challenges and strategies for data analysis

F Finotello, B Di Camillo - Briefings in functional genomics, 2015 - academic.oup.com
RNA-seq is a methodology for RNA profiling based on next-generation sequencing that
enables to measure and compare gene expression patterns at unprecedented resolution …

ANOVA-like differential expression (ALDEx) analysis for mixed population RNA-Seq

AD Fernandes, JM Macklaim, TG Linn, G Reid… - PloS one, 2013 - journals.plos.org
Experimental variance is a major challenge when dealing with high-throughput sequencing
data. This variance has several sources: sampling replication, technical replication …

Variation in thermal performance among insect populations

BJ Sinclair, CM Williams… - Physiological and …, 2012 - journals.uchicago.edu
Among-population variation in insect thermal performance is important for understanding
patterns and mechanisms of evolution and predicting insect responses to altered climate …

Transcriptome profiling of chemosensory appendages in the malaria vector Anopheles gambiae reveals tissue- and sex-specific signatures of odor coding

RJ Pitts, DC Rinker, PL Jones, A Rokas, LJ Zwiebel - BMC genomics, 2011 - Springer
Background Chemosensory signal transduction guides the behavior of many insects,
including Anopheles gambiae, the major vector for human malaria in sub-Saharan Africa. To …

The highly polymorphic CYP6M7 cytochrome P450 gene partners with the directionally selected CYP6P9a and CYP6P9b genes to expand the pyrethroid resistance front in the …

JM Riveron, SS Ibrahim, E Chanda, T Mzilahowa… - BMC genomics, 2014 - Springer
Background Pyrethroid resistance in the major malaria vector Anopheles funestus is rapidly
expanding across Southern Africa. It remains unknown whether this resistance has a unique …

RNA-Seq and molecular docking reveal multi-level pesticide resistance in the bed bug

P Mamidala, AJ Wijeratne, S Wijeratne, K Kornacker… - BMC genomics, 2012 - Springer
Abstract Background Bed bugs (Cimex lectularius) are hematophagous nocturnal parasites
of humans that have attained high impact status due to their worldwide resurgence. The …

Rapid seasonal evolution in innate immunity of wild Drosophila melanogaster

EL Behrman, VM Howick, M Kapun… - … of the Royal …, 2018 - royalsocietypublishing.org
Understanding the rate of evolutionary change and the genetic architecture that facilitates
rapid adaptation is a current challenge in evolutionary biology. Comparative studies show …

De Novo Sequencing and Characterization of the Floral Transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae)

XM Zhang, L Zhao, Z Larson-Rabin, DZ Li, ZH Guo - 2012 - journals.plos.org
Background Transcriptome sequencing can be used to determine gene sequences and
transcript abundance in non-model species, and the advent of next-generation sequencing …

De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum

JP Der, MS Barker, NJ Wickett, CW dePamphilis… - BMC genomics, 2011 - Springer
Background Because of their phylogenetic position and unique characteristics of their
biology and life cycle, ferns represent an important lineage for studying the evolution of land …