UniProt tools: BLAST, align, peptide search, and ID mapping
R Zaru, S Orchard, UniProt Consortium - Current protocols, 2023 - Wiley Online Library
Abstract The Universal Protein Resource (UniProt) is a comprehensive resource for protein
sequence and annotation data (UniProt Consortium, 2023). The UniProt website receives …
sequence and annotation data (UniProt Consortium, 2023). The UniProt website receives …
PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information
VA Simossis, J Heringa - Nucleic acids research, 2005 - academic.oup.com
PRofile ALIgNEment (PRALINE) is a fully customizable multiple sequence alignment
application. In addition to a number of available alignment strategies, PRALINE can …
application. In addition to a number of available alignment strategies, PRALINE can …
UniProt tools
S Pundir, MJ Martin, C O'Donovan… - Current protocols in …, 2016 - Wiley Online Library
Abstract The Universal Protein Resource (UniProt) is a comprehensive resource for protein
sequence and annotation data (UniProt Consortium, 2015). The UniProt Web site receives∼ …
sequence and annotation data (UniProt Consortium, 2015). The UniProt Web site receives∼ …
Integrating protein secondary structure prediction and multiple sequence alignment
VA Simossis, J Heringa - Current Protein and Peptide Science, 2004 - ingentaconnect.com
Modern protein secondary structure prediction methods are based on exploiting
evolutionary information contained in multiple sequence alignments. Critical steps in the …
evolutionary information contained in multiple sequence alignments. Critical steps in the …
Designing new β-lactams: implications from their targets, resistance factors and synthesizing enzymes
KS Goo, TS Sim - Current Computer-Aided Drug Design, 2011 - ingentaconnect.com
Penicillins and cephalosporins are β-lactam antibiotics widely used to treat bacterial
infectious diseases. They mainly target the cell wall biosynthesis pathway to inhibit bacterial …
infectious diseases. They mainly target the cell wall biosynthesis pathway to inhibit bacterial …
Geometricus represents protein structures as shape-mers derived from moment invariants
Motivation As the number of experimentally solved protein structures rises, it becomes
increasingly appealing to use structural information for predictive tasks involving proteins …
increasingly appealing to use structural information for predictive tasks involving proteins …
In silico environmental sampling of emerging fungal pathogens via big data analysis
Yeast species in the Candida haemulonii complex (C. haemulonii, C. haemulonii var.
vulnera, C. duobushaemulonii, C. pseudohaemulonii, and C. vulturna) and closely related …
vulnera, C. duobushaemulonii, C. pseudohaemulonii, and C. vulturna) and closely related …
The PRALINE online server: optimising progressive multiple alignment on the web
VA Simossis, J Heringa - 2003 - Elsevier
We introduce the online server for PRALINE (http://ibium. cs. vu. nl/programs/pralinewww/),
an iterative versatile progressive multiple sequence alignment (MSA) tool. PRALINE …
an iterative versatile progressive multiple sequence alignment (MSA) tool. PRALINE …
Strategies for increasing protein stability
PG Chandler, SS Broendum, BT Riley… - Protein Nanotechnology …, 2020 - Springer
The stability of wild-type proteins is often a hurdle to their practical use in research, industry,
and medicine. The route to engineering stability of a protein of interest lies largely with the …
and medicine. The route to engineering stability of a protein of interest lies largely with the …
Revolutionizing genomics with reinforcement learning techniques
In recent years, Reinforcement Learning (RL) has emerged as a powerful tool for solving a
wide range of problems, including decision-making and genomics. The exponential growth …
wide range of problems, including decision-making and genomics. The exponential growth …