Functional data analysis: An introduction and recent developments
Functional data analysis (FDA) is a statistical framework that allows for the analysis of
curves, images, or functions on higher dimensional domains. The goals of FDA, such as …
curves, images, or functions on higher dimensional domains. The goals of FDA, such as …
The shape of phylogenetic treespace
K St. John - Systematic biology, 2017 - academic.oup.com
Trees are a canonical structure for representing evolutionary histories. Many popular criteria
used to infer optimal trees are computationally hard, and the number of possible tree shapes …
used to infer optimal trees are computationally hard, and the number of possible tree shapes …
Geodesic exponential kernels: When curvature and linearity conflict
We consider kernel methods on general geodesic metric spaces and provide both negative
and positive results. First we show that the common Gaussian kernel can only be …
and positive results. First we show that the common Gaussian kernel can only be …
[图书][B] Nonparametric statistics on manifolds and their applications to object data analysis
V Patrangenaru, L Ellingson - 2016 - api.taylorfrancis.com
The main objective of this book is to introduce the reader to a new way of analyzing object
data, that primarily takes into account the geometry of the spaces of objects measured on the …
data, that primarily takes into account the geometry of the spaces of objects measured on the …
Barycentric subspace analysis on manifolds
X Pennec - 2018 - projecteuclid.org
Supplement A: Hessian of the Riemannian squared distance. This supplementary material
describes in more length the notions of Riemannian geometry that are underlying the main …
describes in more length the notions of Riemannian geometry that are underlying the main …
Populations of unlabelled networks: Graph space geometry and generalized geodesic principal components
Statistical analysis for populations of networks is widely applicable, but challenging, as
networks have strongly non-Euclidean behaviour. Graph space is an exhaustive framework …
networks have strongly non-Euclidean behaviour. Graph space is an exhaustive framework …
Tropical principal component analysis and its application to phylogenetics
Principal component analysis is a widely used method for the dimensionality reduction of a
given data set in a high-dimensional Euclidean space. Here we define and analyze two …
given data set in a high-dimensional Euclidean space. Here we define and analyze two …
[HTML][HTML] Polyhedral computational geometry for averaging metric phylogenetic trees
E Miller, M Owen, JS Provan - Advances in Applied Mathematics, 2015 - Elsevier
This paper investigates the computational geometry relevant to calculations of the Fréchet
mean and variance for probability distributions on the phylogenetic tree space of Billera …
mean and variance for probability distributions on the phylogenetic tree space of Billera …
Convexity in tree spaces
We study the geometry of metrics and convexity structures on the space of phylogenetic
trees, which is here realized as the tropical linear space of all ultrametrics. The CAT(0) …
trees, which is here realized as the tropical linear space of all ultrametrics. The CAT(0) …
Information geometry for phylogenetic trees
MK Garba, TMW Nye, J Lueg… - Journal of Mathematical …, 2021 - Springer
We propose a new space of phylogenetic trees which we call wald space. The motivation is
to develop a space suitable for statistical analysis of phylogenies, but with a geometry based …
to develop a space suitable for statistical analysis of phylogenies, but with a geometry based …