Functional data analysis: An introduction and recent developments

J Gertheiss, D Rügamer, BXW Liew… - Biometrical …, 2024 - Wiley Online Library
Functional data analysis (FDA) is a statistical framework that allows for the analysis of
curves, images, or functions on higher dimensional domains. The goals of FDA, such as …

The shape of phylogenetic treespace

K St. John - Systematic biology, 2017 - academic.oup.com
Trees are a canonical structure for representing evolutionary histories. Many popular criteria
used to infer optimal trees are computationally hard, and the number of possible tree shapes …

Geodesic exponential kernels: When curvature and linearity conflict

A Feragen, F Lauze, S Hauberg - Proceedings of the IEEE …, 2015 - cv-foundation.org
We consider kernel methods on general geodesic metric spaces and provide both negative
and positive results. First we show that the common Gaussian kernel can only be …

[图书][B] Nonparametric statistics on manifolds and their applications to object data analysis

V Patrangenaru, L Ellingson - 2016 - api.taylorfrancis.com
The main objective of this book is to introduce the reader to a new way of analyzing object
data, that primarily takes into account the geometry of the spaces of objects measured on the …

Barycentric subspace analysis on manifolds

X Pennec - 2018 - projecteuclid.org
Supplement A: Hessian of the Riemannian squared distance. This supplementary material
describes in more length the notions of Riemannian geometry that are underlying the main …

Populations of unlabelled networks: Graph space geometry and generalized geodesic principal components

A Calissano, A Feragen, S Vantini - Biometrika, 2024 - academic.oup.com
Statistical analysis for populations of networks is widely applicable, but challenging, as
networks have strongly non-Euclidean behaviour. Graph space is an exhaustive framework …

Tropical principal component analysis and its application to phylogenetics

R Yoshida, L Zhang, X Zhang - Bulletin of mathematical biology, 2019 - Springer
Principal component analysis is a widely used method for the dimensionality reduction of a
given data set in a high-dimensional Euclidean space. Here we define and analyze two …

[HTML][HTML] Polyhedral computational geometry for averaging metric phylogenetic trees

E Miller, M Owen, JS Provan - Advances in Applied Mathematics, 2015 - Elsevier
This paper investigates the computational geometry relevant to calculations of the Fréchet
mean and variance for probability distributions on the phylogenetic tree space of Billera …

Convexity in tree spaces

B Lin, B Sturmfels, X Tang, R Yoshida - SIAM Journal on Discrete Mathematics, 2017 - SIAM
We study the geometry of metrics and convexity structures on the space of phylogenetic
trees, which is here realized as the tropical linear space of all ultrametrics. The CAT(0) …

Information geometry for phylogenetic trees

MK Garba, TMW Nye, J Lueg… - Journal of Mathematical …, 2021 - Springer
We propose a new space of phylogenetic trees which we call wald space. The motivation is
to develop a space suitable for statistical analysis of phylogenies, but with a geometry based …