[PDF][PDF] SARS-CoV-2 human T cell epitopes: Adaptive immune response against COVID-19

A Grifoni, J Sidney, R Vita, B Peters, S Crotty… - Cell host & …, 2021 - cell.com
Over the past year, numerous studies in the peer reviewed and preprint literature have
reported on the virological, epidemiological and clinical characteristics of the coronavirus …

A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction

S Mei, F Li, A Leier, TT Marquez-Lago… - Briefings in …, 2020 - academic.oup.com
Human leukocyte antigen class I (HLA-I) molecules are encoded by major histocompatibility
complex (MHC) class I loci in humans. The binding and interaction between HLA-I …

Possible role of HLA class-I genotype in SARS-CoV-2 infection and progression: A pilot study in a cohort of Covid-19 Spanish patients

I Iturrieta-Zuazo, CG Rita, A García-Soidán… - Clinical …, 2020 - Elsevier
Abstract Human Leukocyte Antigen (HLA) includes a large set of genes with important
actions in immune response against viral infection. Numerous studies have revealed the …

Non-mutational neoantigens in disease

LJ Stern, C Clement, L Galluzzi, L Santambrogio - Nature Immunology, 2024 - nature.com
The ability of mammals to mount adaptive immune responses culminating with the
establishment of immunological memory is predicated on the ability of the mature T cell …

[HTML][HTML] Advances in the evolutionary understanding of MHC polymorphism

J Radwan, W Babik, J Kaufman, TL Lenz, J Winternitz - Trends in Genetics, 2020 - cell.com
Proteins encoded by the classical major histocompatibility complex (MHC) genes incite the
vertebrate adaptive immune response by presenting peptide antigens on the cell surface …

[PDF][PDF] Identification of presented SARS-CoV-2 HLA class I and HLA class II peptides using HLA peptidomics

A Nagler, S Kalaora, C Barbolin, A Gangaev… - Cell Reports, 2021 - cell.com
The human leukocyte antigen (HLA)-bound viral antigens serve as an immunological
signature that can be selectively recognized by T cells. As viruses evolve by acquiring …

Structural and physical features that distinguish tumor-controlling from inactive cancer neoepitopes

JM Custodio, CM Ayres, TJ Rosales… - Proceedings of the …, 2023 - National Acad Sciences
Neoepitopes arising from amino acid substitutions due to single nucleotide polymorphisms
are targets of T cell immune responses to cancer and are of significant interest in the …

[HTML][HTML] T cell epitope prediction and its application to immunotherapy

AL Schaap-Johansen, M Vujović, A Borch… - Frontiers in …, 2021 - frontiersin.org
T cells play a crucial role in controlling and driving the immune response with their ability to
discriminate peptides derived from healthy as well as pathogenic proteins. In this review, we …

High-throughput, targeted MHC class I immunopeptidomics using a functional genetics screening platform

PM Bruno, RT Timms, NS Abdelfattah, Y Leng… - Nature …, 2023 - nature.com
Identification of CD8+ T cell epitopes is critical for the development of immunotherapeutics.
Existing methods for major histocompatibility complex class I (MHC class I) ligand discovery …

[HTML][HTML] Structure based prediction of neoantigen immunogenicity

TP Riley, GLJ Keller, AR Smith, LM Davancaze… - Frontiers in …, 2019 - frontiersin.org
The development of immunological therapies that incorporate peptide antigens presented to
T cells by MHC proteins is a long sought-after goal, particularly for cancer, where mutated …