[HTML][HTML] Genotype imputation methods and their effects on genomic predictions in cattle
In this study, we reviewed six imputation methods (Impute 2, FImpute 2.2, Beagle 4.1,
Beagle 3.3. 2, MaCH, and Bimbam) and evaluated the accuracy of imputation from …
Beagle 3.3. 2, MaCH, and Bimbam) and evaluated the accuracy of imputation from …
[HTML][HTML] Evaluation of low-density SNP panels and imputation for cost-effective genomic selection in four aquaculture species
Genomic selection can accelerate genetic progress in aquaculture breeding programmes,
particularly for traits measured on siblings of selection candidates. However, it is not widely …
particularly for traits measured on siblings of selection candidates. However, it is not widely …
Justification for setting the individual animal genotype call rate threshold at eighty-five percent
Data quality of SNP arrays impacts the accuracy and precision of downstream data
analyses. One such quality control measure often imposed is a threshold on individual …
analyses. One such quality control measure often imposed is a threshold on individual …
[HTML][HTML] Marker selection and genomic prediction of economically important traits using imputed high-density genotypes for 5 breeds of dairy cattle
Marker sets used in US dairy genomic predictions were previously expanded by including
high-density (HD) or sequence markers with the largest effects for Holstein breed only. Other …
high-density (HD) or sequence markers with the largest effects for Holstein breed only. Other …
[HTML][HTML] Concordance rate between copy number variants detected using either high-or medium-density single nucleotide polymorphism genotype panels and the …
Background The trading of individual animal genotype information often involves only the
exchange of the called genotypes and not necessarily the additional information required to …
exchange of the called genotypes and not necessarily the additional information required to …
[HTML][HTML] Improving the accuracy of genomic prediction for meat quality traits using whole genome sequence data in pigs
Background Pork quality can directly affect customer purchase tendency and meat quality
traits have become valuable in modern pork production. However, genetic improvement has …
traits have become valuable in modern pork production. However, genetic improvement has …
Genomic selection in dairy cattle simulated populations
L de Oliveira Seno, DGF Guidolin… - Journal of Dairy …, 2018 - cambridge.org
Genomic selection is arguably the most promising tool for improving genetic gain in
domestic animals to emerge in the last few decades, but is an expensive process. The aim of …
domestic animals to emerge in the last few decades, but is an expensive process. The aim of …
[HTML][HTML] Imputation accuracy from low-to medium-density SNP chips for US crossbred dairy cattle
This study aimed at evaluating the quality of imputation accuracy (IA) by marker (IA m) and
by individual (IA i) in US crossbred dairy cattle. Holstein× Jersey crossbreds were used to …
by individual (IA i) in US crossbred dairy cattle. Holstein× Jersey crossbreds were used to …
[HTML][HTML] Genotype imputation in a tropical crossbred dairy cattle population
The objective of this study was to investigate different strategies for genotype imputation in a
population of crossbred Girolando (Gyr× Holstein) dairy cattle. The data set consisted of 478 …
population of crossbred Girolando (Gyr× Holstein) dairy cattle. The data set consisted of 478 …
[HTML][HTML] Study on the introgression of beef breeds in Canchim cattle using single nucleotide polymorphism markers
ME Buzanskas, RV Ventura, TC Seleguim Chud… - PLoS …, 2017 - journals.plos.org
The aim of this study was to evaluate the level of introgression of breeds in the Canchim
(CA: 62.5% Charolais—37.5% Zebu) and MA genetic group (MA: 65.6% Charolais—34.4 …
(CA: 62.5% Charolais—37.5% Zebu) and MA genetic group (MA: 65.6% Charolais—34.4 …