[HTML][HTML] Chloroplast genomes: diversity, evolution, and applications in genetic engineering

H Daniell, CS Lin, M Yu, WJ Chang - Genome biology, 2016 - Springer
Chloroplasts play a crucial role in sustaining life on earth. The availability of over 800
sequenced chloroplast genomes from a variety of land plants has enhanced our …

[HTML][HTML] The chloroplast genome sequence of bittersweet (Solanum dulcamara): Plastid genome structure evolution in Solanaceae

A Amiryousefi, J Hyvönen, P Poczai - PloS one, 2018 - journals.plos.org
Bittersweet (Solanum dulcamara) is a native Old World member of the nightshade family.
This European diploid species can be found from marshlands to high mountainous regions …

[HTML][HTML] The complete chloroplast genomes of six Ipomoea species and indel marker development for the discrimination of authentic Pharbitidis Semen (Seeds of I. nil …

I Park, S Yang, WJ Kim, P Noh, HO Lee… - Frontiers in plant …, 2018 - frontiersin.org
Ipomoea L. is the largest genus within the Convolvulaceae and contains 600–700 species.
Ipomoea species (morning glories) are economically valuable as horticultural species and …

[HTML][HTML] The complete chloroplast genome sequences of Fritillaria ussuriensis Maxim. and Fritillaria cirrhosa D. Don, and comparative analysis with other Fritillaria …

I Park, WJ Kim, SM Yeo, G Choi, YM Kang, R Piao… - Molecules, 2017 - mdpi.com
The genus Fritillaria belongs to the widely distributed Liliaceae. The bulbs of Fritillaria, F.
ussuriensis and F. cirrhosa are valuable herbaceous medicinal ingredients. However, they …

[HTML][HTML] Comparing and phylogenetic analysis chloroplast genome of three Achyranthes species

J Xu, X Shen, B Liao, J Xu, D Hou - Scientific reports, 2020 - nature.com
In this study, the chloroplast genome sequencing of the Achyranthes longifolia, Achyranthes
bidentata and Achyranthes aspera were performed by Next-generation sequencing …

[HTML][HTML] Sequencing and Comparative Analysis of the Chloroplast Genome of Angelica polymorpha and the Development of a Novel Indel Marker for Species …

I Park, S Yang, WJ Kim, JH Song, HS Lee, HO Lee… - Molecules, 2019 - mdpi.com
The genus Angelica (Apiaceae) comprises valuable herbal medicines. In this study, we
determined the complete chloroplast (CP) genome sequence of A. polymorpha and …

Homologous recombination and retention of a single form of most genes shape the highly chimeric mitochondrial genome of a cybrid plant

MV Sanchez‐Puerta, MK Zubko, JD Palmer - New Phytologist, 2015 - Wiley Online Library
The structure and evolution of angiosperm mitochondrial genomes are driven by extremely
high rates of recombination and rearrangement. An excellent experimental system for …

[HTML][HTML] Sequencing and Structural Analysis of the Complete Chloroplast Genome of the Medicinal Plant Lycium chinense Mill

Z Yang, Y Huang, W An, X Zheng, S Huang, L Liang - Plants, 2019 - mdpi.com
Lycium chinense Mill, an important Chinese herbal medicine, is widely used as a dietary
supplement and food. Here the chloroplast (CP) genome of L. chinense was sequenced and …

[HTML][HTML] Characterization of the Evolutionary Pressure on Anisodus tanguticus Maxim. with Complete Chloroplast Genome Sequence

D Zhou, F Mehmood, P Lin, T Cheng, H Wang, S Shi… - Genes, 2022 - mdpi.com
Anisodus tanguticus Maxim.(Solanaceae), a traditional endangered Tibetan herb, is
endemic to the Qinghai–Tibet Plateau. Here, we report the de novo assembled chloroplast …

Synonymous codon usage bias in the plastid genome is unrelated to gene structure and shows evolutionary heterogeneity

Y Qi, W Xu, T Xing, M Zhao, N Li, L Yan… - Evolutionary …, 2015 - journals.sagepub.com
Synonymous codon usage bias (SCUB) is the nonuniform usage of codons, occurring often
in nearly all organisms. Our previous study found that SCUB is correlated with intron …