[PDF][PDF] Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction

Y Xu, X Zhang, H Li, H Zheng, J Zhang, MS Olsen… - Molecular Plant, 2022 - cell.com
The first paradigm of plant breeding involves direct selection-based phenotypic observation,
followed by predictive breeding using statistical models for quantitative traits constructed …

Genomic selection in plant breeding: methods, models, and perspectives

J Crossa, P Pérez-Rodríguez, J Cuevas… - Trends in plant …, 2017 - cell.com
Genomic selection (GS) facilitates the rapid selection of superior genotypes and accelerates
the breeding cycle. In this review, we discuss the history, principles, and basis of GS and …

[HTML][HTML] A review of deep learning applications for genomic selection

OA Montesinos-López, A Montesinos-López… - BMC genomics, 2021 - Springer
Abstract Background Several conventional genomic Bayesian (or no Bayesian) prediction
methods have been proposed including the standard additive genetic effect model for which …

[HTML][HTML] LightGBM: accelerated genomically designed crop breeding through ensemble learning

J Yan, Y Xu, Q Cheng, S Jiang, Q Wang, Y Xiao, C Ma… - Genome biology, 2021 - Springer
LightGBM is an ensemble model of decision trees for classification and regression
prediction. We demonstrate its utility in genomic selection-assisted breeding with a large …

[HTML][HTML] Genomic selection: A tool for accelerating the efficiency of molecular breeding for development of climate-resilient crops

N Budhlakoti, AK Kushwaha, A Rai… - Frontiers in …, 2022 - frontiersin.org
Since the inception of the theory and conceptual framework of genomic selection (GS),
extensive research has been done on evaluating its efficiency for utilization in crop …

Genomic selection: genome-wide prediction in plant improvement

ZA Desta, R Ortiz - Trends in plant science, 2014 - cell.com
Association analysis is used to measure relations between markers and quantitative trait loci
(QTL). Their estimation ignores genes with small effects that trigger underpinning …

[HTML][HTML] Genomic selection methods for crop improvement: Current status and prospects

X Wang, Y Xu, Z Hu, C Xu - The Crop Journal, 2018 - Elsevier
With marker and phenotype information from observed populations, genomic selection (GS)
can be used to establish associations between markers and phenotypes. It aims to use …

[HTML][HTML] Harnessing crop wild diversity for climate change adaptation

AJ Cortés, F López-Hernández - Genes, 2021 - mdpi.com
Warming and drought are reducing global crop production with a potential to substantially
worsen global malnutrition. As with the green revolution in the last century, plant genetics …

[HTML][HTML] Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number …

J Spindel, H Begum, D Akdemir, P Virk, B Collard… - PLoS …, 2015 - journals.plos.org
Genomic Selection (GS) is a new breeding method in which genome-wide markers are used
to predict the breeding value of individuals in a breeding population. GS has been shown to …

[HTML][HTML] Genome-wide prediction models that incorporate de novo GWAS are a powerful new tool for tropical rice improvement

JE Spindel, H Begum, D Akdemir, B Collard, E Redoña… - Heredity, 2016 - nature.com
To address the multiple challenges to food security posed by global climate change,
population growth and rising incomes, plant breeders are developing new crop varieties that …