Systems biology of cancer metastasis

Y Suhail, MP Cain, K Vanaja, PA Kurywchak… - Cell systems, 2019 - cell.com
Cancer metastasis is no longer viewed as a linear cascade of events but rather as a series
of concurrent, partially overlapping processes, as successfully metastasizing cells assume …

Genetically encoded fluorescent biosensors illuminate the spatiotemporal regulation of signaling networks

EC Greenwald, S Mehta, J Zhang - Chemical reviews, 2018 - ACS Publications
Cellular signaling networks are the foundation which determines the fate and function of
cells as they respond to various cues and stimuli. The discovery of fluorescent proteins over …

Mitogen signaling strength and duration can control cell cycle decisions

R Nussinov, W Zhang, Y Liu, H Jang - Science Advances, 2024 - science.org
Decades ago, mitogen-promoted signaling duration and strength were observed to be
sensed by the cell and to be critical for its decisions: to proliferate or differentiate. Landmark …

The extracellular matrix as a key regulator of intracellular signalling networks

JF Hastings, JN Skhinas, D Fey… - British journal of …, 2019 - Wiley Online Library
The extracellular matrix (ECM) is a salient feature of all solid tissues within the body. This
complex, acellular entity is composed of hundreds of individual molecules whose assembly …

[HTML][HTML] Collective ERK/Akt activity waves orchestrate epithelial homeostasis by driving apoptosis-induced survival

PA Gagliardi, M Dobrzyński, MA Jacques… - Developmental cell, 2021 - cell.com
Cell death events continuously challenge epithelial barrier function yet are crucial to
eliminate old or critically damaged cells. How such apoptotic events are spatio-temporally …

Optogenetic control of YAP reveals a dynamic communication code for stem cell fate and proliferation

K Meyer, NC Lammers, LJ Bugaj, HG Garcia… - Nature …, 2023 - nature.com
YAP is a transcriptional regulator that controls pluripotency, cell fate, and proliferation. How
cells ensure the selective activation of YAP effector genes is unknown. This knowledge is …

[HTML][HTML] Tracing information flow from Erk to target gene induction reveals mechanisms of dynamic and combinatorial control

MZ Wilson, PT Ravindran, WA Lim, JE Toettcher - Molecular cell, 2017 - cell.com
Cell signaling networks coordinate specific patterns of protein expression in response to
external cues, yet the logic by which signaling pathway activity determines the eventual …

A real-time biosensor for ERK activity reveals signaling dynamics during C. elegans cell fate specification

C De la Cova, R Townley, S Regot, I Greenwald - Developmental cell, 2017 - cell.com
Kinase translocation reporters (KTRs) are genetically encoded fluorescent activity sensors
that convert kinase activity into a nucleocytoplasmic shuttling equilibrium for visualizing …

NeoR, a near-infrared absorbing rhodopsin

M Broser, A Spreen, PE Konold, E Schiewer… - Nature …, 2020 - nature.com
The Rhizoclosmatium globosum genome encodes three rhodopsin-guanylyl cyclases
(RGCs), which are predicted to facilitate visual orientation of the fungal zoospores. Here, we …

Measuring signaling and RNA-seq in the same cell links gene expression to dynamic patterns of NF-κB activation

K Lane, D Van Valen, MM DeFelice, DN Macklin… - Cell systems, 2017 - cell.com
Signaling proteins display remarkable cell-to-cell heterogeneity in their dynamic responses
to stimuli, but the consequences of this heterogeneity remain largely unknown. For instance …