Genome regulation by long noncoding RNAs

JL Rinn, HY Chang - Annual review of biochemistry, 2012 - annualreviews.org
The central dogma of gene expression is that DNA is transcribed into messenger RNAs,
which in turn serve as the template for protein synthesis. The discovery of extensive …

Cancer transcriptome profiling at the juncture of clinical translation

M Cieślik, AM Chinnaiyan - Nature Reviews Genetics, 2018 - nature.com
Methodological breakthroughs over the past four decades have repeatedly revolutionized
transcriptome profiling. Using RNA sequencing (RNA-seq), it has now become possible to …

The human genome browser at UCSC

WJ Kent, CW Sugnet, TS Furey, KM Roskin… - Genome …, 2002 - genome.cshlp.org
As vertebrate genome sequences near completion and research refocuses to their analysis,
the issue of effective genome annotation display becomes critical. A mature web tool for …

Mechanisms of alternative pre-messenger RNA splicing

DL Black - Annual review of biochemistry, 2003 - annualreviews.org
▪ Abstract Alternative pre-mRNA splicing is a central mode of genetic regulation in higher
eukaryotes. Variability in splicing patterns is a major source of protein diversity from the …

ANEW APPROACH TO DECODING LIFE: Systems Biology

T Ideker, T Galitski, L Hood - Annual review of genomics and …, 2001 - annualreviews.org
▪ Abstract Systems biology studies biological systems by systematically perturbing them
(biologically, genetically, or chemically); monitoring the gene, protein, and informational …

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

YH Yang, S Dudoit, P Luu, DM Lin, V Peng… - Nucleic acids …, 2002 - academic.oup.com
There are many sources of systematic variation in cDNA microarray experiments which
affect the measured gene expression levels (eg differences in labeling efficiency between …

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

RIKEN Genome Exploration Research Group Phase I … - Nature, 2002 - nature.com
Only a small proportion of the mouse genome is transcribed into mature messenger RNA
transcripts. There is an international collaborative effort to identify all full-length mRNA …

Genetics of gene expression and its effect on disease

V Emilsson, G Thorleifsson, B Zhang, AS Leonardson… - Nature, 2008 - nature.com
Common human diseases result from the interplay of many genes and environmental
factors. Therefore, a more integrative biology approach is needed to unravel the complexity …

Direct ultrasensitive electrical detection of DNA and DNA sequence variations using nanowire nanosensors

J Hahm, CM Lieber - Nano letters, 2004 - ACS Publications
The development of electrically addressable, label-free detectors for DNA and other
biological macromolecules has the potential to impact basic biological research as well as …

A genomic view of alternative splicing

B Modrek, C Lee - Nature genetics, 2002 - nature.com
Recent genome-wide analyses of alternative splicing indicate that 40–60% of human genes
have alternative splice forms, suggesting that alternative splicing is one of the most …