[HTML][HTML] Exploring the crop epigenome: a comparison of DNA methylation profiling techniques

DR Agius, A Kapazoglou, E Avramidou… - Frontiers in Plant …, 2023 - frontiersin.org
Epigenetic modifications play a vital role in the preservation of genome integrity and in the
regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic …

[HTML][HTML] Chromatin remodeling and epigenetic regulation in plant DNA damage repair

JH Kim - International Journal of Molecular Sciences, 2019 - mdpi.com
DNA damage response (DDR) in eukaryotic cells is initiated in the chromatin context. DNA
damage and repair depend on or have influence on the chromatin dynamics associated with …

A comparative analysis of 5-azacytidine-and zebularine-induced DNA demethylation

PT Griffin, CE Niederhuth… - G3: Genes, Genomes …, 2016 - academic.oup.com
The nonmethylable cytosine analogs, 5-azacytidine and zebularine, are widely used to
inhibit DNA methyltransferase activity and reduce genomic DNA methylation. In this study …

A plant-specific module for homologous recombination repair

X Wang, L Wang, Y Huang, Z Deng… - Proceedings of the …, 2022 - National Acad Sciences
Homologous recombination repair (HR) is an error-free DNA damage repair pathway to
maintain genome stability and a basis of gene targeting using genome-editing tools …

Natural epigenetic variation contributes to heritable flowering divergence in a widespread asexual dandelion lineage

RA Wilschut, C Oplaat, LB Snoek, J Kirschner… - Molecular …, 2016 - Wiley Online Library
Epigenetic variation has been proposed to contribute to the success of asexual plants, either
as a contributor to phenotypic plasticity or by enabling transient adaptation via selection on …

[HTML][HTML] Recurrent evolution of heat-responsiveness in Brassicaceae COPIA elements

B Pietzenuk, C Markus, H Gaubert, N Bagwan… - Genome biology, 2016 - Springer
Background The mobilization of transposable elements (TEs) is suppressed by host genome
defense mechanisms. Recent studies showed that the cis-regulatory region of Arabidopsis …

Experimentally heat‐induced transposition increases drought tolerance in Arabidopsis thaliana

M Thieme, A Brêchet, Y Bourgeois, B Keller… - New …, 2022 - Wiley Online Library
Eukaryotic genomes contain a vast diversity of transposable elements (TEs). Formerly often
described as selfish and parasitic DNA sequences, TEs are now recognised as a source of …

[HTML][HTML] Population genomics and epigenomics of Spirodela polyrhiza provide insights into the evolution of facultative asexuality

Y Wang, P Duchen, A Chávez, KS Sree… - Communications …, 2024 - nature.com
Many plants are facultatively asexual, balancing short-term benefits with long-term costs of
asexuality. During range expansion, natural selection likely influences the genetic controls …

SMC5/6 complex-mediated SUMOylation stimulates DNA–protein cross-link repair in Arabidopsis

E Dvořák Tomaštíková, K Prochazkova, F Yang… - The Plant …, 2023 - academic.oup.com
DNA–protein cross-links (DPCs) are highly toxic DNA lesions consisting of proteins
covalently attached to chromosomal DNA. Unrepaired DPCs physically block DNA …

[HTML][HTML] Genome-wide identification of RETINOBLASTOMA RELATED 1 binding sites in Arabidopsis reveals novel DNA damage regulators

D Bouyer, M Heese, P Chen, H Harashima… - PLoS …, 2018 - journals.plos.org
Retinoblastoma (pRb) is a multifunctional regulator, which was likely present in the last
common ancestor of all eukaryotes. The Arabidopsis pRb homolog RETINOBLASTOMA …