[HTML][HTML] Exploring the crop epigenome: a comparison of DNA methylation profiling techniques
Epigenetic modifications play a vital role in the preservation of genome integrity and in the
regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic …
regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic …
[HTML][HTML] Chromatin remodeling and epigenetic regulation in plant DNA damage repair
JH Kim - International Journal of Molecular Sciences, 2019 - mdpi.com
DNA damage response (DDR) in eukaryotic cells is initiated in the chromatin context. DNA
damage and repair depend on or have influence on the chromatin dynamics associated with …
damage and repair depend on or have influence on the chromatin dynamics associated with …
A comparative analysis of 5-azacytidine-and zebularine-induced DNA demethylation
PT Griffin, CE Niederhuth… - G3: Genes, Genomes …, 2016 - academic.oup.com
The nonmethylable cytosine analogs, 5-azacytidine and zebularine, are widely used to
inhibit DNA methyltransferase activity and reduce genomic DNA methylation. In this study …
inhibit DNA methyltransferase activity and reduce genomic DNA methylation. In this study …
A plant-specific module for homologous recombination repair
X Wang, L Wang, Y Huang, Z Deng… - Proceedings of the …, 2022 - National Acad Sciences
Homologous recombination repair (HR) is an error-free DNA damage repair pathway to
maintain genome stability and a basis of gene targeting using genome-editing tools …
maintain genome stability and a basis of gene targeting using genome-editing tools …
Natural epigenetic variation contributes to heritable flowering divergence in a widespread asexual dandelion lineage
Epigenetic variation has been proposed to contribute to the success of asexual plants, either
as a contributor to phenotypic plasticity or by enabling transient adaptation via selection on …
as a contributor to phenotypic plasticity or by enabling transient adaptation via selection on …
[HTML][HTML] Recurrent evolution of heat-responsiveness in Brassicaceae COPIA elements
Background The mobilization of transposable elements (TEs) is suppressed by host genome
defense mechanisms. Recent studies showed that the cis-regulatory region of Arabidopsis …
defense mechanisms. Recent studies showed that the cis-regulatory region of Arabidopsis …
Experimentally heat‐induced transposition increases drought tolerance in Arabidopsis thaliana
M Thieme, A Brêchet, Y Bourgeois, B Keller… - New …, 2022 - Wiley Online Library
Eukaryotic genomes contain a vast diversity of transposable elements (TEs). Formerly often
described as selfish and parasitic DNA sequences, TEs are now recognised as a source of …
described as selfish and parasitic DNA sequences, TEs are now recognised as a source of …
[HTML][HTML] Population genomics and epigenomics of Spirodela polyrhiza provide insights into the evolution of facultative asexuality
Many plants are facultatively asexual, balancing short-term benefits with long-term costs of
asexuality. During range expansion, natural selection likely influences the genetic controls …
asexuality. During range expansion, natural selection likely influences the genetic controls …
SMC5/6 complex-mediated SUMOylation stimulates DNA–protein cross-link repair in Arabidopsis
E Dvořák Tomaštíková, K Prochazkova, F Yang… - The Plant …, 2023 - academic.oup.com
DNA–protein cross-links (DPCs) are highly toxic DNA lesions consisting of proteins
covalently attached to chromosomal DNA. Unrepaired DPCs physically block DNA …
covalently attached to chromosomal DNA. Unrepaired DPCs physically block DNA …
[HTML][HTML] Genome-wide identification of RETINOBLASTOMA RELATED 1 binding sites in Arabidopsis reveals novel DNA damage regulators
D Bouyer, M Heese, P Chen, H Harashima… - PLoS …, 2018 - journals.plos.org
Retinoblastoma (pRb) is a multifunctional regulator, which was likely present in the last
common ancestor of all eukaryotes. The Arabidopsis pRb homolog RETINOBLASTOMA …
common ancestor of all eukaryotes. The Arabidopsis pRb homolog RETINOBLASTOMA …