Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

S Orchard, S Kerrien, S Abbani, B Aranda, J Bhate… - Nature …, 2012 - nature.com
Abstract The International Molecular Exchange (IMEx) consortium is an international
collaboration between major public interaction data providers to share literature-curation …

History of protein–protein interactions: From egg‐white to complex networks

P Braun, AC Gingras - Proteomics, 2012 - Wiley Online Library
Today, it is widely appreciated that protein–protein interactions play a fundamental role in
biological processes. This was not always the case. The study of protein interactions started …

A reference map of the human binary protein interactome

K Luck, DK Kim, L Lambourne, K Spirohn, BE Begg… - Nature, 2020 - nature.com
Global insights into cellular organization and genome function require comprehensive
understanding of the interactome networks that mediate genotype–phenotype relationships …

Integrative methods for analyzing big data in precision medicine

V Gligorijević, N Malod‐Dognin, N Pržulj - Proteomics, 2016 - Wiley Online Library
We provide an overview of recent developments in big data analyses in the context of
precision medicine and health informatics. With the advance in technologies capturing …

The binary protein-protein interaction landscape of Escherichia coli

SV Rajagopala, P Sikorski, A Kumar, R Mosca… - Nature …, 2014 - nature.com
Efforts to map the Escherichia coli interactome have identified several hundred
macromolecular complexes, but direct binary protein-protein interactions (PPIs) have not …

Proteome-scale human interactomics

K Luck, GM Sheynkman, I Zhang, M Vidal - Trends in biochemical sciences, 2017 - cell.com
Cellular functions are mediated by complex interactome networks of physical, biochemical,
and functional interactions between DNA sequences, RNA molecules, proteins, lipids, and …

Diversity in Genetic In Vivo Methods for Protein-Protein Interaction Studies: from the Yeast Two-Hybrid System to the Mammalian Split-Luciferase System

B Stynen, H Tournu, J Tavernier… - … and molecular biology …, 2012 - Am Soc Microbiol
The yeast two-hybrid system pioneered the field of in vivo protein-protein interaction
methods and undisputedly gave rise to a palette of ingenious techniques that are constantly …

Protein interactome reveals converging molecular pathways among autism disorders

Y Sakai, CA Shaw, BC Dawson, DV Dugas… - Science translational …, 2011 - science.org
To uncover shared pathogenic mechanisms among the highly heterogeneous autism
spectrum disorders (ASDs), we developed a protein interaction network that identified …

Discovering cellular protein‐protein interactions: Technological strategies and opportunities

K Titeca, I Lemmens, J Tavernier… - Mass spectrometry …, 2019 - Wiley Online Library
The analysis of protein interaction networks is one of the key challenges in the study of
biology. It connects genotypes to phenotypes, and disruption often leads to diseases …

A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis

S Lumba, S Toh, LF Handfield, M Swan, R Liu… - Developmental Cell, 2014 - cell.com
The sesquiterpenoid abscisic acid (ABA) mediates an assortment of responses across a
variety of kingdoms including both higher plants and animals. In plants, where most is …