An introduction to NMR-based approaches for measuring protein dynamics

IR Kleckner, MP Foster - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2011 - Elsevier
Proteins are inherently flexible at ambient temperature. At equilibrium, they are
characterized by a set of conformations that undergo continuous exchange within a …

NMR characterization of the dynamics of biomacromolecules

AG Palmer III - Chemical reviews, 2004 - ACS Publications
Function in biological systems is exquisitely dependent on spatial and temporal changes in
biomacromolecules. Innumerable biological processes ultimately rely on transduction of …

Studying “invisible” excited protein states in slow exchange with a major state conformation

P Vallurupalli, G Bouvignies, LE Kay - Journal of the American …, 2012 - ACS Publications
Ever since its initial development, solution NMR spectroscopy has been used as a tool to
study conformational exchange. Although many systems are amenable to relaxation …

Protein activity regulation by conformational entropy

SR Tzeng, CG Kalodimos - Nature, 2012 - nature.com
How the interplay between protein structure and internal dynamics regulates protein function
is poorly understood. Often, ligand binding, post-translational modifications and mutations …

Nuclear magnetic resonance methods for quantifying microsecond-to-millisecond motions in biological macromolecules

AG Palmer III, CD Kroenke, JP Loria - Methods in enzymology, 2001 - Elsevier
Protein function depends on transitions from the ground state to higher energy states.
Deviations from the ground-state structure result from chemical reactivity and conformational …

Hidden alternative structures of proline isomerase essential for catalysis

JS Fraser, MW Clarkson, SC Degnan, R Erion, D Kern… - Nature, 2009 - nature.com
A long-standing challenge is to understand at the atomic level how protein dynamics
contribute to enzyme catalysis. X-ray crystallography can provide snapshots of …

Protein dynamics from NMR

R Ishima, DA Torchia - Nature structural biology, 2000 - nature.com
This review surveys recent investigations of conformational fluctuations of proteins in
solution using NMR techniques. Advances in experimental methods have provided more …

Chemical exchange in biomacromolecules: past, present, and future

AG Palmer III - Journal of magnetic resonance, 2014 - Elsevier
The perspective reviews quantitative investigations of chemical exchange phenomena in
proteins and other biological macromolecules using NMR spectroscopy, particularly …

An NMR perspective on enzyme dynamics

DD Boehr, HJ Dyson, PE Wright - Chemical reviews, 2006 - ACS Publications
Enzyme catalysis is an inherently dynamic process. Binding and release of ligands is often
accompanied by conformational changes, both subtle and dramatic (reviewed more …

Dynamic activation of an allosteric regulatory protein

SR Tzeng, CG Kalodimos - Nature, 2009 - nature.com
Allosteric regulation is used as a very efficient mechanism to control protein activity in most
biological processes, including signal transduction, metabolism, catalysis and gene …