[HTML][HTML] Complementary biophysical tools to investigate lipid specificity in the interaction between bioactive molecules and the plasma membrane: A review

M Deleu, JM Crowet, MN Nasir, L Lins - Biochimica et Biophysica Acta (BBA …, 2014 - Elsevier
Plasma membranes are complex entities common to all living cells. The basic principle of
their organization appears very simple, but they are actually of high complexity and …

Shedding light on the structural properties of lipid bilayers using molecular dynamics simulation: a review study

S Moradi, A Nowroozi, M Shahlaei - RSC advances, 2019 - pubs.rsc.org
In recent years, a massive increase has been observed in the number of published articles
describing accurate and reliable molecular dynamics simulations of lipid bilayers. This is …

Membrane proteins bind lipids selectively to modulate their structure and function

A Laganowsky, E Reading, TM Allison… - Nature, 2014 - nature.com
Previous studies have established that the folding, structure and function of membrane
proteins are influenced by their lipid environments,,,,,, and that lipids can bind to specific …

Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types

JB Klauda, RM Venable, JA Freites… - The journal of …, 2010 - ACS Publications
A significant modification to the additive all-atom CHARMM lipid force field (FF) is developed
and applied to phospholipid bilayers with both choline and ethanolamine containing head …

Derivation and systematic validation of a refined all-atom force field for phosphatidylcholine lipids

JPM Jämbeck, AP Lyubartsev - The journal of physical chemistry …, 2012 - ACS Publications
An all-atomistic force field (FF) has been developed for fully saturated phospholipids. The
parametrization has been largely based on high-level ab initio calculations in order to keep …

An extension and further validation of an all-atomistic force field for biological membranes

JPM Jambeck, AP Lyubartsev - Journal of chemical theory and …, 2012 - ACS Publications
Biological membranes are versatile in composition and host intriguing molecular processes.
In order to be able to study these systems, an accurate model Hamiltonian or force field (FF) …

Development of the CHARMM force field for lipids

RW Pastor, AD MacKerell Jr - The journal of physical chemistry …, 2011 - ACS Publications
The development of the CHARMM additive all-atom lipid force field (FF) is traced from the
early 1990s to the most recent version (C36) published in 2010. Though simulations with …

Another piece of the membrane puzzle: extending slipids further

JPM Jambeck, AP Lyubartsev - Journal of chemical theory and …, 2013 - ACS Publications
To be able to model complex biological membranes in a more realistic manner, the force
field Slipids (Stockholm lipids) has been extended to include parameters for sphingomyelin …

On the calculation of acyl chain order parameters from lipid simulations

TJ Piggot, JR Allison, RB Sessions… - Journal of chemical …, 2017 - ACS Publications
For molecular dynamics simulations of biological membrane systems to live up to the
potential of providing accurate atomic level detail into membrane properties and functions, it …

Molecular dynamics simulations of phosphatidylcholine membranes: a comparative force field study

TJ Piggot, A Pineiro, S Khalid - Journal of chemical theory and …, 2012 - ACS Publications
Molecular dynamics simulations provide a route to studying the dynamics of lipid bilayers at
atomistic or near atomistic resolution. Over the past 10 years or so, molecular dynamics …