[HTML][HTML] Complementary biophysical tools to investigate lipid specificity in the interaction between bioactive molecules and the plasma membrane: A review
Plasma membranes are complex entities common to all living cells. The basic principle of
their organization appears very simple, but they are actually of high complexity and …
their organization appears very simple, but they are actually of high complexity and …
Shedding light on the structural properties of lipid bilayers using molecular dynamics simulation: a review study
In recent years, a massive increase has been observed in the number of published articles
describing accurate and reliable molecular dynamics simulations of lipid bilayers. This is …
describing accurate and reliable molecular dynamics simulations of lipid bilayers. This is …
Membrane proteins bind lipids selectively to modulate their structure and function
Previous studies have established that the folding, structure and function of membrane
proteins are influenced by their lipid environments,,,,,, and that lipids can bind to specific …
proteins are influenced by their lipid environments,,,,,, and that lipids can bind to specific …
Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types
JB Klauda, RM Venable, JA Freites… - The journal of …, 2010 - ACS Publications
A significant modification to the additive all-atom CHARMM lipid force field (FF) is developed
and applied to phospholipid bilayers with both choline and ethanolamine containing head …
and applied to phospholipid bilayers with both choline and ethanolamine containing head …
Derivation and systematic validation of a refined all-atom force field for phosphatidylcholine lipids
JPM Jämbeck, AP Lyubartsev - The journal of physical chemistry …, 2012 - ACS Publications
An all-atomistic force field (FF) has been developed for fully saturated phospholipids. The
parametrization has been largely based on high-level ab initio calculations in order to keep …
parametrization has been largely based on high-level ab initio calculations in order to keep …
An extension and further validation of an all-atomistic force field for biological membranes
JPM Jambeck, AP Lyubartsev - Journal of chemical theory and …, 2012 - ACS Publications
Biological membranes are versatile in composition and host intriguing molecular processes.
In order to be able to study these systems, an accurate model Hamiltonian or force field (FF) …
In order to be able to study these systems, an accurate model Hamiltonian or force field (FF) …
Development of the CHARMM force field for lipids
RW Pastor, AD MacKerell Jr - The journal of physical chemistry …, 2011 - ACS Publications
The development of the CHARMM additive all-atom lipid force field (FF) is traced from the
early 1990s to the most recent version (C36) published in 2010. Though simulations with …
early 1990s to the most recent version (C36) published in 2010. Though simulations with …
Another piece of the membrane puzzle: extending slipids further
JPM Jambeck, AP Lyubartsev - Journal of chemical theory and …, 2013 - ACS Publications
To be able to model complex biological membranes in a more realistic manner, the force
field Slipids (Stockholm lipids) has been extended to include parameters for sphingomyelin …
field Slipids (Stockholm lipids) has been extended to include parameters for sphingomyelin …
On the calculation of acyl chain order parameters from lipid simulations
TJ Piggot, JR Allison, RB Sessions… - Journal of chemical …, 2017 - ACS Publications
For molecular dynamics simulations of biological membrane systems to live up to the
potential of providing accurate atomic level detail into membrane properties and functions, it …
potential of providing accurate atomic level detail into membrane properties and functions, it …
Molecular dynamics simulations of phosphatidylcholine membranes: a comparative force field study
Molecular dynamics simulations provide a route to studying the dynamics of lipid bilayers at
atomistic or near atomistic resolution. Over the past 10 years or so, molecular dynamics …
atomistic or near atomistic resolution. Over the past 10 years or so, molecular dynamics …