Recent advances in machine learning methods for predicting heat shock proteins

W Chen, P Feng, T Liu, D Jin - Current Drug Metabolism, 2019 - ingentaconnect.com
Background: As molecular chaperones, Heat Shock Proteins (HSPs) not only play key roles
in protein folding and maintaining protein stabilities, but are also linked with multiple kinds of …

A short survey on protein blocks

AP Joseph, G Agarwal, S Mahajan, JC Gelly… - Biophysical …, 2010 - Springer
Protein structures are classically described in terms of secondary structures. However, even
if the regular secondary structures have relevant physical meaning, their recognition based …

iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition

PM Feng, W Chen, H Lin, KC Chou - Analytical biochemistry, 2013 - Elsevier
Heat shock proteins (HSPs) are a type of functionally related proteins present in all living
organisms, both prokaryotes and eukaryotes. They play essential roles in protein–protein …

[HTML][HTML] pLoc_bal-mHum: predict subcellular localization of human proteins by PseAAC and quasi-balancing training dataset

KC Chou, X Cheng, X Xiao - Genomics, 2019 - Elsevier
A cell contains numerous protein molecules. One of the fundamental goals in molecular cell
biology is to determine their subcellular locations since this information is extremely …

Identification of Heat Shock Protein families and J-protein types by incorporating Dipeptide Composition into Chou's general PseAAC

S Ahmad, M Kabir, M Hayat - Computer methods and programs in …, 2015 - Elsevier
Abstract Heat Shock Proteins (HSPs) are the substantial ingredients for cell growth and
viability, which are found in all living organisms. HSPs manage the process of folding and …

RAACBook: a web server of reduced amino acid alphabet for sequence-dependent inference by using Chou's five-step rule

L Zheng, S Huang, N Mu, H Zhang, J Zhang… - Database, 2019 - academic.oup.com
By reducing amino acid alphabet, the protein complexity can be significantly simplified,
which could improve computational efficiency, decrease information redundancy and reduce …

RaacLogo: a new sequence logo generator by using reduced amino acid clusters

L Zheng, D Liu, W Yang, L Yang… - Briefings in …, 2021 - academic.oup.com
Sequence logos give a fast and concise display in visualizing consensus sequence. Protein
exhibits greater complexity and diversity than DNA, which usually affects the graphical …

Predicting peroxidase subcellular location by hybridizing different descriptors of Chou'pseudo amino acid patterns

YC Zuo, Y Peng, L Liu, W Chen, L Yang, GL Fan - Analytical biochemistry, 2014 - Elsevier
Peroxidases as universal enzymes are essential for the regulation of reactive oxygen
species levels and play major roles in both disease prevention and human pathologies …

iDPF-PseRAAAC: a web-server for identifying the defensin peptide family and subfamily using pseudo reduced amino acid alphabet composition

Y Zuo, Y Lv, Z Wei, L Yang, G Li, G Fan - PloS one, 2015 - journals.plos.org
Defensins as one of the most abundant classes of antimicrobial peptides are an essential
part of the innate immunity that has evolved in most living organisms from lower organisms …

Analysis and prediction of animal toxins by various Chou's pseudo components and reduced amino acid compositions

Y Pan, S Wang, Q Zhang, Q Lu, D Su, Y Zuo… - Journal of theoretical …, 2019 - Elsevier
The animal toxin proteins are one of the disulfide rich small peptides that detected in
venomous species. They are used as pharmacological tools and therapeutic agents in …